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Colloids and proteins alike can bind to lipid bilayers and move laterally in these two-dimensional fluids. Inspired by proteins that generate membrane curvature, sense the underlying membrane geometry, and migrate to high curvature sites,…

We address the problem of learning on sets of features, motivated by the need of performing pooling operations in long biological sequences of varying sizes, with long-range dependencies, and possibly few labeled data. To address this…

机器学习 · 计算机科学 2021-02-11 Grégoire Mialon , Dexiong Chen , Alexandre d'Aspremont , Julien Mairal

Cells often migrate on curved surfaces inside the body, such as curved tissues, blood vessels or highly curved protrusions of other cells. Recent \textit{in-vitro} experiments provide clear evidence that motile cells are affected by the…

Many porous media are mixtures of inert and reactive materials, manifesting spatio-chemical heterogeneity. We study the evolution of scalar transport in a chemically heterogeneous material that mimics a green roof soil substrate,…

流体动力学 · 物理学 2025-08-27 Kaj Pettersson , Albin Nordlander , Angela Sasic Kalagasidis , Oskar Modin , Dario Maggiolo

We use moving light patterns to control the motion of {\it Escherichia coli} bacteria whose motility is photo-activated. Varying the pattern speed controls the magnitude and direction of the bacterial flux, and therefore the accumulation of…

We present a learning-based dynamics model for granular material manipulation. Inspired by the Eulerian approach commonly used in fluid dynamics, our method adopts a fully convolutional neural network that operates on a density field-based…

机器人学 · 计算机科学 2023-11-03 Shangjie Xue , Shuo Cheng , Pujith Kachana , Danfei Xu

Cell spreading and motility on an adhesive substrate are driven by the active physical forces generated by the actin cytoskeleton. We have recently shown that coupling curved membrane complexes to protrusive forces, exerted by the actin…

软凝聚态物质 · 物理学 2023-04-04 Shubhadeep Sadhukhan , Samo Penič , Aleš Iglič , Nir Gov

When two binary solutions are separated by a permeable barrier, the individual species typically diffuse and mix, dissipating their chemical potential gradients. However, we use model lattice simulations to show that single-file…

统计力学 · 物理学 2009-10-31 Tom Chou , Detlef Lohse

Previously, transport networks are usually treated as homogeneous networks, that is, every node has the same function, simultaneously providing and requiring resources. However, some real networks, such as power grid and supply chain…

数据分析、统计与概率 · 物理学 2010-06-08 Yu-Han Chen , Bing-Hong Wang , Li-Chao Zhao , Changsong Zhou , Tao Zhou

Network flows often exhibit a hierarchical tree-like structure that can be attributed to the minimisation of dissipation. The common feature of such systems is a single source and multiple sinks (or vice versa). In contrast, here we study…

组织与器官 · 定量生物学 2020-05-27 Julius B. Kirkegaard , Kim Sneppen

We investigate the down-hill creep of a layer of granular material on a slope caused by an oscillatory variation of the size of the particles. The material is modeled as an athermal two dimensional polydisperse system of soft disks under…

软凝聚态物质 · 物理学 2022-08-31 E. A. Jagla

We present a continuum approach to model segregation of size-bidisperse granular materials in unsteady bounded heap flow as a prototype for modeling segregation in other time varying flows. In experiments, a periodically modulated feed rate…

软凝聚态物质 · 物理学 2022-08-02 Hongyi Xiao , Zhekai Deng , Julio M. Ottino , Paul B. Umbanhowar , Richard M. Lueptow

Learning and memory are acquired through long-lasting changes in synapses. In the simplest models, such synaptic potentiation typically leads to runaway excitation, but in reality there must exist processes that robustly preserve overall…

神经元与认知 · 定量生物学 2016-10-26 Yogesh S. Virkar , Woodrow L. Shew , Juan G. Restrepo , Edward Ott

In this work, we tackle the problem of modeling the vehicle environment as dynamic occupancy grid map in complex urban scenarios using recurrent neural networks. Dynamic occupancy grid maps represent the scene in a bird's eye view, where…

机器人学 · 计算机科学 2022-05-06 Marcel Schreiber , Vasileios Belagiannis , Claudius Glaeser , Klaus Dietmayer

Understanding how receptive fields emerge and organize within brain networks and how neural dynamics couple with stimuli space is fundamental to neuroscience. Models often rely on fine-tuning connectivity to match empirical data, which may…

神经元与认知 · 定量生物学 2026-01-07 Vasilii Tiselko , Alexander Gorsky , Yuri Dabaghian

We investigate self-moving particles which prefer to hop with a certain turning angle equally distributed to the right or left. We assume this turning angle distribution to be given by a double Gaussian distribution. Based on the model of…

种群与进化 · 定量生物学 2007-05-23 Lutz Schimansky-Geier , Udo Erdmann , Niko Komin

We propose a novel multiple-scale spatial marching method for flows with slow streamwise variation. The key idea is to couple the boundary region equations, which govern large-scale flow evolution, with local exact coherent structures that…

流体动力学 · 物理学 2026-01-14 Runjie Song , Kengo Deguchi

Granular media such as sand and sugar are ubiquitous in nature and industry but are less well understood than fluids or solids. We consider the behavior of rapid granular flows where the transfer of momenta by collisions dominates. The…

软凝聚态物质 · 物理学 2009-09-29 Harry L. Swinney , E. C. Rericha

With a toppling rule which generates metastable sites, we explore the properties of a gradient-driven sandpile that is minimally perturbed at one boundary. In two dimensions we find that the transport of grains takes place along deep…

统计力学 · 物理学 2009-11-07 Lucian Anton , Hendrik B. Geyer

Certain sequences of peptoid polymers (synthetic analogs of peptides) assemble into bilayer nanosheets via a nonequilibrium assembly pathway of adsorption, compression, and collapse at an air-water interface. As with other large-scale…

生物物理 · 物理学 2014-10-01 Thomas K. Haxton , Ranjan V. Mannige , Ronald N. Zuckermann , Stephen Whitelam