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Extracting detailed clinical information from free-text medical narratives remains a practical challenge for researchers and healthcare systems. Terminology for immune-mediated and infectious diseases is especially inconsistent across…

计算与语言 · 计算机科学 2026-05-29 Veysel Kocaman , Gursev Pirge , Yigit Gul , Ace Vo , Zhenya Nargizyan , David Talby

In recent years, Deep Learning (DL) models are becoming important due to their demonstrated success at overcoming complex learning problems. DL models have been applied effectively for different Natural Language Processing (NLP) tasks such…

计算与语言 · 计算机科学 2019-11-06 Hamada A. Nayel , Shashrekha H. L

In Natural Language Processing (NLP), Machine Reading Comprehension (MRC) is the task of answering a question based on a given context. To handle questions in the medical domain, modern language models such as BioBERT, SciBERT and even…

计算与语言 · 计算机科学 2024-12-16 Saptarshi Sengupta , Connor Heaton , Suhan Cui , Soumalya Sarkar , Prasenjit Mitra

Biomedical Named Entity Recognition (BioNER) is a crucial step for analyzing Biomedical texts, which aims at extracting biomedical named entities from a given text. Different supervised machine learning algorithms have been applied for…

计算与语言 · 计算机科学 2019-08-19 Hamada A. Nayel , H. L. Shashirekha , Hiroyuki Shindo , Yuji Matsumoto

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

计算与语言 · 计算机科学 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

Contextual word embedding models, such as BioBERT and Bio_ClinicalBERT, have achieved state-of-the-art results in biomedical natural language processing tasks by focusing their pre-training process on domain-specific corpora. However, such…

计算与语言 · 计算机科学 2021-06-04 George Michalopoulos , Yuanxin Wang , Hussam Kaka , Helen Chen , Alexander Wong

This paper proposes a medical literature summary generation method based on the BERT model to address the challenges brought by the current explosion of medical information. By fine-tuning and optimizing the BERT model, we develop an…

计算与语言 · 计算机科学 2024-10-29 Jiacheng Hu , Yiru Cang , Guiran Liu , Meiqi Wang , Weijie He , Runyuan Bao

The specialized language and complex concepts in physics pose significant challenges for information extraction through Natural Language Processing (NLP). Central to effective NLP applications is the text embedding model, which converts…

计算物理 · 物理学 2024-08-20 Thorsten Hellert , João Montenegro , Andrea Pollastro

Recent advancements in the field of natural language processing (NLP) and especially large language models (LLMs) and their numerous applications have brought research attention to design of different document processing tools and…

计算与语言 · 计算机科学 2025-02-18 Vladimir Kalušev , Branko Brkljač

In this paper, we introduce the NameRec* task, which aims to do highly accurate and fine-grained person name recognition. Traditional Named Entity Recognition models have good performance in recognising well-formed person names from text…

计算与语言 · 计算机科学 2021-03-24 Rui Zhang , Yimeng Dai , Shijie Liu

Both generic and domain-specific BERT models are widely used for natural language processing (NLP) tasks. In this paper we investigate the vulnerability of BERT models to variation in input data for Named Entity Recognition (NER) through…

计算与语言 · 计算机科学 2022-02-01 Anne Dirkson , Suzan Verberne , Wessel Kraaij

Recent years have seen particular interest in using electronic medical records (EMRs) for secondary purposes to enhance the quality and safety of healthcare delivery. EMRs tend to contain large amounts of valuable clinical notes. Learning…

计算与语言 · 计算机科学 2022-07-25 Hoda Memarzadeh , Nasser Ghadiri , Maryam Lotfi Shahreza

Large Language Models (LLMs), particularly those similar to ChatGPT, have significantly influenced the field of Natural Language Processing (NLP). While these models excel in general language tasks, their performance in domain-specific…

计算与语言 · 计算机科学 2024-01-02 Omid Rohanian , Mohammadmahdi Nouriborji , David A. Clifton

Although deep learning techniques have shown significant achievements, they frequently depend on extensive amounts of hand-labeled data and tend to perform inadequately in few-shot scenarios. The objective of this study is to devise a…

计算与语言 · 计算机科学 2024-10-28 Leilei Su , Jian Chen , Yifan Peng , Cong Sun

This work presents the development and evaluation of an NLP-enabled probabilistic classifier designed to estimate the probability of technical and regulatory success (pTRS) for clinical trials in the field of neuroscience. While…

机器学习 · 计算机科学 2025-12-02 Michael R. Doane

Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…

计算与语言 · 计算机科学 2021-05-25 Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek

The objective of this study is to develop natural language processing (NLP) models that can analyze patients' drug reviews and accurately classify their satisfaction levels as positive, neutral, or negative. Such models would reduce the…

计算与语言 · 计算机科学 2023-08-09 Yue Ling

Concept normalization in free-form texts is a crucial step in every text-mining pipeline. Neural architectures based on Bidirectional Encoder Representations from Transformers (BERT) have achieved state-of-the-art results in the biomedical…

计算与语言 · 计算机科学 2021-01-26 Zulfat Miftahutdinov , Artur Kadurin , Roman Kudrin , Elena Tutubalina

Background and Objective: Biomedical Named Entity Recognition (BioNER) is a foundational task in medical informatics, crucial for downstream applications like drug discovery and clinical trial matching. However, adapting general-domain…

计算与语言 · 计算机科学 2025-12-30 Jian Chen , Leilei Su , Cong Sun

Healthcare predictive analytics aids medical decision-making, diagnosis prediction and drug review analysis. Therefore, prediction accuracy is an important criteria which also necessitates robust predictive language models. However, the…

计算与语言 · 计算机科学 2021-04-06 Ishani Mondal