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Spatial transcriptomics (ST) is essential for understanding diseases and developing novel treatments. It measures gene expression of each fine-grained area (i.e., different windows) in the tissue slide with low throughput. This paper…

计算机视觉与模式识别 · 计算机科学 2022-11-01 Yan Yang , Md Zakir Hossain , Eric A Stone , Shafin Rahman

Recent 2D-to-3D human pose estimation works tend to utilize the graph structure formed by the topology of the human skeleton. However, we argue that this skeletal topology is too sparse to reflect the body structure and suffer from serious…

计算机视觉与模式识别 · 计算机科学 2023-04-05 Han Li , Bowen Shi , Wenrui Dai , Yabo Chen , Botao Wang , Yu Sun , Min Guo , Chenlin Li , Junni Zou , Hongkai Xiong

Graph signal processing (GSP) is becoming a major tool in biomedical signal and image analysis. In most GSP techniques, graph structures and edge weights have been typically set via statistical and computational methods. More recently,…

计算机视觉与模式识别 · 计算机科学 2026-04-07 Asmaa M. Elwer , Muhammad A. Rushdi , Mahmoud H. Annaby

Spatial transcriptomics (ST) has emerged as a powerful technology for bridging histology imaging with gene expression profiling. However, its application has been limited by low throughput and the need for specialized experimental…

计算机视觉与模式识别 · 计算机科学 2025-06-09 Tinglin Huang , Tianyu Liu , Mehrtash Babadi , Wengong Jin , Rex Ying

Recent progress in aspect-level sentiment classification has been propelled by the incorporation of graph neural networks (GNNs) leveraging syntactic structures, particularly dependency trees. Nevertheless, the performance of these models…

计算与语言 · 计算机科学 2023-12-08 Jane Sunny , Tom Padraig , Roggie Terry , Woods Ali

Segmenting the boundary between tumor and healthy tissue during surgical cancer resection poses a significant challenge. In recent years, Hyperspectral Imaging (HSI) combined with Machine Learning (ML) has emerged as a promising solution.…

Graph convolutional networks (GCNs) have emerged as a powerful alternative to multiple instance learning with convolutional neural networks in digital pathology, offering superior handling of structural information across various spatial…

图像与视频处理 · 电气工程与系统科学 2024-03-25 Victor Ibañez , Przemyslaw Szostak , Quincy Wong , Konstanty Korski , Samaneh Abbasi-Sureshjani , Alvaro Gomariz

We investigate the problem of multiplex graph embedding, that is, graphs in which nodes interact through multiple types of relations (dimensions). In recent years, several methods have been developed to address this problem. However, the…

机器学习 · 计算机科学 2023-12-29 Kamel Abdous , Nairouz Mrabah , Mohamed Bouguessa

Applications based on image retrieval require editing and associating in intermediate spaces that are representative of the high-level concepts like objects and their relationships rather than dense, pixel-level representations like RGB…

计算机视觉与模式识别 · 计算机科学 2022-07-11 Rishi Agarwal , Tirupati Saketh Chandra , Vaidehi Patil , Aniruddha Mahapatra , Kuldeep Kulkarni , Vishwa Vinay

In this paper, we introduce a novel method for merging the weights of multiple pre-trained neural networks using a genetic algorithm called MeGA. Traditional techniques, such as weight averaging and ensemble methods, often fail to fully…

神经与进化计算 · 计算机科学 2024-07-01 Daniel Yun

Graph neural networks (GNNs) provide powerful insights for brain neuroimaging technology from the view of graphical networks. However, most existing GNN-based models assume that the neuroimaging-produced brain connectome network is a…

机器学习 · 计算机科学 2022-09-30 Gen Shi , Yifan Zhu , Wenjin Liu , Quanming Yao , Xuesong Li

Multivariate time series is prevalent in many scientific and industrial domains. Modeling multivariate signals is challenging due to their long-range temporal dependencies and intricate interactions--both direct and indirect. To confront…

机器学习 · 计算机科学 2023-12-01 Juhyeon Kim , Hyungeun Lee , Seungwon Yu , Ung Hwang , Wooyul Jung , Miseon Park , Kijung Yoon

Graph Neural Networks (GNNs) have demonstrated impressive performance across diverse graph-based tasks by leveraging message passing to capture complex node relationships. However, on large-scale real-world graphs, GNNs face two major…

机器学习 · 计算机科学 2026-03-10 Xiang Li , Jianpeng Qi , Haobing Liu , Yuan Cao , Guoqing Chao , Zhongying Zhao , Junyu Dong , Xinwang Liu , Yanwei Yu

In pathology, tissue samples are assessed using multiple staining techniques to enhance contrast in unique histologic features. In this paper, we introduce a multimodal CNN-GNN based graph fusion approach that leverages complementary…

图像与视频处理 · 电气工程与系统科学 2022-04-28 Chaitanya Dwivedi , Shima Nofallah , Maryam Pouryahya , Janani Iyer , Kenneth Leidal , Chuhan Chung , Timothy Watkins , Andrew Billin , Robert Myers , John Abel , Ali Behrooz

Machine learning (ML) and deep learning (DL) techniques have gained significant attention as reduced order models (ROMs) to computationally expensive structural analysis methods, such as finite element analysis (FEA). Graph neural network…

机器学习 · 计算机科学 2023-09-25 Yuecheng Cai , Jasmin Jelovica

Graph-based neural network models are gaining traction in the field of representation learning due to their ability to uncover latent topological relationships between entities that are otherwise challenging to identify. These models have…

图像与视频处理 · 电气工程与系统科学 2023-07-25 Aryan Singh , Pepijn Van de Ven , Ciarán Eising , Patrick Denny

Graph neural networks (GNNs) face significant challenges with class imbalance, leading to biased inference results. To address this issue in heterogeneous graphs, we propose a novel framework that combines Graph Neural Network (GNN) and…

机器学习 · 计算机科学 2024-11-26 Hung-Chun Hsu , Bo-Jun Wu , Ming-Yi Hong , Che Lin , Chih-Yu Wang

Graph representation learning methods are highly effective in handling complex non-Euclidean data by capturing intricate relationships and features within graph structures. However, traditional methods face challenges when dealing with…

机器学习 · 计算机科学 2025-02-25 Hang Gao , Chenhao Zhang , Fengge Wu , Junsuo Zhao , Changwen Zheng , Huaping Liu

City-scale logistics routing has become increasingly challenging as metropolitan road networks grow to tens of millions of edges and traffic conditions evolve rapidly under high-volume mobility demands. Conventional centralized routing…

系统与控制 · 电气工程与系统科学 2025-12-23 Zihan Han , Lingran Meng , Jingwei Zhang

Agriculture, as the cornerstone of human civilization, constantly seeks to integrate technology for enhanced productivity and sustainability. This paper introduces $\textit{Agri-GNN}$, a novel Genotypic-Topological Graph Neural Network…

机器学习 · 计算机科学 2023-10-23 Aditya Gupta , Asheesh Singh