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We present new algorithms for the parallelization of Eulerian-Lagrangian interaction operations in the immersed boundary method. Our algorithms rely on two well-studied parallel primitives: key-value sort and segmented reduce. The use of…

分布式、并行与集群计算 · 计算机科学 2021-11-02 Andrew Kassen , Varun Shankar , Aaron L Fogelson

Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly problem fall into two broad categories -- based on the data structures which…

数据结构与算法 · 计算机科学 2010-03-10 Vamsi Kundeti , Sanguthevar Rajasekaran , Hieu Dinh

We propose a new arc consistency enforcement paradigm that transforms arc consistency enforcement into recurrent tensor operations. In each iteration of the recurrence, all involved processes can be fully parallelized with tensor…

分布式、并行与集群计算 · 计算机科学 2024-07-17 Mingqi Yang

We investigate the parallel performance of Parallel Spectral Deferred corrections, a numerical approach that provides small-scale parallelism for the numerical solution of initial value problems. The scheme is applied to the shallow-water…

计算工程、金融与科学 · 计算机科学 2026-03-04 Philip Freese , Sebastian Götschel , Thibaut Lunet , Daniel Ruprecht , Martin Schreiber

The paper deals with the developing of the methodological backgrounds for the modeling and simulation of complex dynamical objects. Such backgrounds allow us to perform coordinate transformation and formulate the algorithm of its usage for…

分布式、并行与集群计算 · 计算机科学 2019-08-07 Roman Voliansky , Andri Pranolo

The sheer sizes of modern datasets are forcing data-structure designers to consider seriously both parallel construction and compactness. To achieve those goals we need to design a parallel algorithm with good scalability and with low…

数据结构与算法 · 计算机科学 2017-05-02 Leo Ferres , José Fuentes-Sepúlveda , Travis Gagie , Meng He , Gonzalo Navarro

Processors with large numbers of cores are becoming commonplace. In order to take advantage of the available resources in these systems, the programming paradigm has to move towards increased parallelism. However, increasing the level of…

分布式、并行与集群计算 · 计算机科学 2014-10-07 Ashkan Tousimojarad , Wim Vanderbauwhede

The core numbers of vertices in a graph are one of the most well-studied cohesive subgraph models because of the linear running time. In practice, many data graphs are dynamic graphs that are continuously changing by inserting or removing…

分布式、并行与集群计算 · 计算机科学 2024-10-14 Bin Guo , Emil Sekerinski

Nowadays, parallel computing is ubiquitous in several application fields, both in engineering and science. The computations rely on the floating-point arithmetic specified by the IEEE754 Standard. In this context, an elementary brick of…

计算与语言 · 计算机科学 2022-05-12 Farah Benmouhoub , Pierre-Loïc Garoche , Matthieu Martel

Tensor computations, with matrix multiplication being the primary operation, serve as the fundamental basis for data analysis, physics, machine learning, and deep learning. As the scale and complexity of data continue to grow rapidly, the…

硬件体系结构 · 计算机科学 2024-10-24 Qizhe Wu , Yuchen Gui , Zhichen Zeng , Xiaotian Wang , Huawen Liang , Xi Jin

We study the computational complexity of the recently proposed nubot model of molecular-scale self-assembly. The model generalises asynchronous cellular automata to have non-local movement where large assemblies of molecules can be pushed…

新兴技术 · 计算机科学 2014-09-08 Moya Chen , Doris Xin , Damien Woods

We report on the implementation of an algorithm for computing the set of all regular triangulations of finitely many points in Euclidean space. This algorithm, which we call down-flip reverse search, can be restricted, e.g., to computing…

组合数学 · 数学 2018-10-30 Charles Jordan , Michael Joswig , Lars Kastner

The use of Model Predictive Control in industry is steadily increasing as more complicated problems can be addressed. Due to that online optimization is usually performed, the main bottleneck with Model Predictive Control is the relatively…

最优化与控制 · 数学 2014-01-31 Isak Nielsen , Daniel Axehill

To prepare images for better segmentation, we need preprocessing applications, such as smoothing, to reduce noise. In this paper, we present an enhanced computation method for smoothing 2D object in binary case. Unlike existing approaches,…

分布式、并行与集群计算 · 计算机科学 2016-03-31 Ramzi Mahmoudi , Mohamed Akil

Today, very large amounts of data are produced and stored in all branches of society including science. Mining these data meaningfully has become a considerable challenge and is of the broadest possible interest. The size, both in numbers…

分布式、并行与集群计算 · 计算机科学 2020-06-11 Andreas Vitalis

The hypercube queueing model was initially developed to address spatial queueing problems and has found wide applications in emergency services, such as ambulance and police systems. While the model was originally designed for homogeneous…

最优化与控制 · 数学 2026-03-10 Cheng Hua , Jun Luo , Arthur J. Swersey , Yixing Wen

Algebraic matrix multiplication algorithms are designed by bounding the rank of matrix multiplication tensors, and then using a recursive method. However, designing algorithms in this way quickly leads to large constant factors: if one…

计算复杂性 · 计算机科学 2024-10-29 Josh Alman , Hantao Yu

In this paper, we describe efficient MapReduce simulations of parallel algorithms specified in the BSP and PRAM models. We also provide some applications of these simulation results to problems in parallel computational geometry for the…

数据结构与算法 · 计算机科学 2015-03-14 Michael T. Goodrich

Generalized sparse matrix-matrix multiplication (or SpGEMM) is a key primitive for many high performance graph algorithms as well as for some linear solvers, such as algebraic multigrid. Here we show that SpGEMM also yields efficient…

分布式、并行与集群计算 · 计算机科学 2015-03-19 Aydin Buluc , John Gilbert

The interplay of quantum and classical simulation and the delicate divide between them is in the focus of massively parallelized tensor network state (TNS) algorithms designed for high performance computing (HPC). In this contribution, we…

量子物理 · 物理学 2023-05-10 Andor Menczer , Örs Legeza