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Disease-gene prediction (DGP) refers to the computational challenge of predicting associations between genes and diseases. Effective solutions to the DGP problem have the potential to accelerate the therapeutic development pipeline at early…

机器学习 · 计算机科学 2019-07-15 Vikash Singh , Pietro Lio'

Geometric graph neural networks (GNNs) excel at capturing molecular geometry, yet their locality-biased message passing hampers the modeling of long-range interactions. Current solutions have fundamental limitations: extending cutoff radii…

机器学习 · 计算机科学 2025-09-29 Haodong Pan , Yusong Wang , Nanning Zheng , Caijui Jiang

Accurately predicting drug-target interactions (DTIs) is pivotal for advancing drug discovery and target validation techniques. While machine learning approaches including those that are based on Graph Neural Networks (GNN) have achieved…

机器学习 · 计算机科学 2025-09-30 Yuehua Song , Yong Gao

Early detection of neurodegenerative disorders is an important open problem, since early diagnosis and treatment may yield a better prognosis. Researchers have recently sought to leverage advances in machine learning algorithms to detect…

机器学习 · 计算机科学 2024-09-23 Abhishek Jaiswal , Nisheeth Srivastava

Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher-order…

化学物理 · 物理学 2023-12-22 Junwu Chen , Philippe Schwaller

Graph Neural Networks (GNNs) have been widely used for various learning tasks, ranging from node classification to link prediction. They have demonstrated excellent performance in multiple domains involving graph-structured data. However,…

机器学习 · 计算机科学 2026-03-19 Steven E. Wilson , Sina Khanmohammadi

Deep learning has proven to yield fast and accurate predictions of quantum-chemical properties to accelerate the discovery of novel molecules and materials. As an exhaustive exploration of the vast chemical space is still infeasible, we…

机器学习 · 统计学 2020-01-10 Niklas W. A. Gebauer , Michael Gastegger , Kristof T. Schütt

Graph convolutional networks (GCNs) have been employed as a kind of significant tool on many graph-based applications recently. Inspired by convolutional neural networks (CNNs), GCNs generate the embeddings of nodes by aggregating the…

机器学习 · 计算机科学 2020-11-20 Tao Huang , Yihan Zhang , Jiajing Wu , Junyuan Fang , Zibin Zheng

We present a graph-based deep learning framework for predicting the magnetic properties of quasi-one-dimensional Ising spin systems. The lattice geometry is encoded as a graph and processed by a graph neural network (GNN) followed by fully…

无序系统与神经网络 · 物理学 2025-07-24 V. Slavin , O. Kryvchikov , D. Laptev

Change detection (CD) in remote sensing images has been an ever-expanding area of research. To date, although many methods have been proposed using various techniques, accurately identifying changes is still a great challenge, especially in…

计算机视觉与模式识别 · 计算机科学 2021-02-17 Junzheng Wu , Biao Li , Yao Qin , Weiping Ni , Han Zhang , Yuli Sun

Graph Neural Networks (GNNs) have emerged as powerful tools for analyzing and learning representations from graph-structured data. A crucial prerequisite for the outstanding performance of GNNs is the availability of complete graph…

机器学习 · 计算机科学 2024-08-12 Peng Yuan , Peng Tang

This paper presents new designs of graph convolutional neural networks (GCNs) on 3D meshes for 3D object segmentation and classification. We use the faces of the mesh as basic processing units and represent a 3D mesh as a graph where each…

计算机视觉与模式识别 · 计算机科学 2021-07-01 Wenming Tang Guoping Qiu

Discovering genes with similar functions across diverse biomedical contexts poses a significant challenge in gene representation learning due to data heterogeneity. In this study, we resolve this problem by introducing a novel model called…

机器学习 · 计算机科学 2023-10-05 Tianyu Liu , Yuge Wang , Rex Ying , Hongyu Zhao

We aim to solve the problem of data-driven collision-distance estimation given 3-dimensional (3D) geometries. Conventional algorithms suffer from low accuracy due to their reliance on limited representations, such as point clouds. In…

机器人学 · 计算机科学 2024-03-12 Minjae Song , Yeseung Kim , Min Jun Kim , Daehyung Park

As a critical cue for understanding human intention, human gaze provides a key signal for Human-Computer Interaction(HCI) applications. Appearance-based gaze estimation, which directly regresses the gaze vector from eye images, has made…

计算机视觉与模式识别 · 计算机科学 2021-11-24 Shaobo Guo , Xiao Jiang , Zhizhong Su , Rui Wu , Xin Wang

Geometric deep learning enables the encoding of physical symmetries in modeling 3D objects. Despite rapid progress in encoding 3D symmetries into Graph Neural Networks (GNNs), a comprehensive evaluation of the expressiveness of these…

机器学习 · 计算机科学 2023-04-12 Weitao Du , Yuanqi Du , Limei Wang , Dieqiao Feng , Guifeng Wang , Shuiwang Ji , Carla Gomes , Zhi-Ming Ma

Homogenization is a technique commonly used in multiscale computational science and engineering for predicting collective response of heterogeneous materials and extracting effective mechanical properties. In this paper, a three-dimensional…

计算工程、金融与科学 · 计算机科学 2020-02-19 Chengping Rao , Yang Liu

Feature-based image matching has extensive applications in computer vision. Keypoints detected in images can be naturally represented as graph structures, and Graph Neural Networks (GNNs) have been shown to outperform traditional deep…

计算机视觉与模式识别 · 计算机科学 2025-08-29 Xianfeng Song , Yi Zou , Zheng Shi , Zheng Liu

Predicting the solubility of given molecules remains crucial in the pharmaceutical industry. In this study, we revisited this extensively studied topic, leveraging the capabilities of contemporary computing resources. We employed two…

定量方法 · 定量生物学 2024-01-08 John Ho , Zhao-Heng Yin , Colin Zhang , Nicole Guo , Yang Ha

Subgraph representation learning based on Graph Neural Network (GNN) has exhibited broad applications in scientific advancements, such as predictions of molecular structure-property relationships and collective cellular function. In…

机器学习 · 计算机科学 2022-10-17 Yili Shen , Xiao Liu , Cheng-Wei Ju , Jiaxu Yan , Jun Yi , Zhou Lin , Hui Guan