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Large language models have been adopted in the medical domain for clinical documentation to reduce clinician burden. However, studies have reported that LLMs often "forget" a significant amount of instruction-following ability when…

计算与语言 · 计算机科学 2026-04-03 Mengxian Lyu , Cheng Peng , Ziyi Chen , Mengyuan Zhang , Jieting Li Lu , Yonghui Wu

Large language models (LLMs) are increasingly used to extract clinical data from electronic health records (EHRs), offering significant improvements in scalability and efficiency for real-world data (RWD) curation in oncology. However, the…

In recent years, Deep Learning (DL) models are becoming important due to their demonstrated success at overcoming complex learning problems. DL models have been applied effectively for different Natural Language Processing (NLP) tasks such…

计算与语言 · 计算机科学 2019-11-06 Hamada A. Nayel , Shashrekha H. L

Artificial intelligence (AI) is widely deployed to solve problems related to marketing attribution and budget optimization. However, AI models can be quite complex, and it can be difficult to understand model workings and insights without…

计算与语言 · 计算机科学 2024-04-23 Yilin Gao , Sai Kumar Arava , Yancheng Li , James W. Snyder

Fine-tuning large language models (LLMs) using diverse datasets is crucial for enhancing their overall performance across various domains. In practical scenarios, existing methods based on modeling the mixture proportions of data…

计算与语言 · 计算机科学 2025-10-31 Zhenqing Ling , Daoyuan Chen , Liuyi Yao , Qianli Shen , Yaliang Li , Ying Shen

Screening patients for enrollment is a well-known, labor-intensive bottleneck that leads to under-enrollment and, ultimately, trial failures. Recent breakthroughs in large language models (LLMs) offer a promising opportunity to use…

计算与语言 · 计算机科学 2026-04-30 Ziyi Chen , Mengxian Lyu , Cheng Peng , Yonghui Wu

The practice of fine-tuning Pre-trained Language Models (PLMs) from general or domain-specific data to a specific task with limited resources, has gained popularity within the field of natural language processing (NLP). In this work, we…

计算与语言 · 计算机科学 2023-10-31 Samuel Belkadi , Lifeng Han , Yuping Wu , Goran Nenadic

Aligning terminological resources, including ontologies, controlled vocabularies, taxonomies, and value sets is a critical part of data integration in many domains such as healthcare, chemistry, and biomedical research. Entity mapping is…

In recent years, pre-trained language models (PLMs) achieve the best performance on a wide range of natural language processing (NLP) tasks. While the first models were trained on general domain data, specialized ones have emerged to more…

Record linkage integrates diverse data sources by identifying records that refer to the same entity. In the context of mineral site records, accurate record linkage is crucial for identifying and mapping mineral deposits. Properly linking…

信息检索 · 计算机科学 2024-12-06 Jiyoon Pyo , Yao-Yi Chiang

Contextual word embedding models such as ELMo (Peters et al., 2018) and BERT (Devlin et al., 2018) have dramatically improved performance for many natural language processing (NLP) tasks in recent months. However, these models have been…

计算与语言 · 计算机科学 2019-06-24 Emily Alsentzer , John R. Murphy , Willie Boag , Wei-Hung Weng , Di Jin , Tristan Naumann , Matthew B. A. McDermott

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

计算与语言 · 计算机科学 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

Clinical trials are a critical process in the medical field for introducing new treatments and innovations. However, cohort selection for clinical trials is a time-consuming process that often requires manual review of patient text records…

计算与语言 · 计算机科学 2025-01-22 Chi-en Amy Tai , Xavier Tannier

Large Language Models (LLMs) such as Gemma-2B have shown strong performance in various natural language processing tasks. However, general-purpose models often lack the domain expertise required for cybersecurity applications. This work…

密码学与安全 · 计算机科学 2026-01-13 Vasanth Iyer , Leonardo Bobadilla , S. S. Iyengar

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Recently, large language models (LLMs) have outperformed human experts in predicting the results of neuroscience experiments (Luo et al., 2024). What is the basis for this performance? One possibility is that statistical patterns in that…

神经元与认知 · 定量生物学 2024-07-03 Xiaoliang Luo , Guangzhi Sun , Bradley C. Love

Data augmentation is a widely used strategy to improve model robustness and generalization by enriching training datasets with synthetic examples. While large language models (LLMs) have demonstrated strong generative capabilities for this…

机器学习 · 计算机科学 2025-09-29 Dongkyu Cho , Miao Zhang , Rumi Chunara

With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant…

神经与进化计算 · 计算机科学 2026-02-26 Lei Zhao , Ling Kang , Quan Guo

Multimodal (MM) learning is emerging as a promising paradigm in biomedical artificial intelligence (AI) applications, integrating complementary modality, which highlight different aspects of patient health. The scarcity of large…

人工智能 · 计算机科学 2025-12-01 Niccolo Marini , Zhaohui Liang , Sivaramakrishnan Rajaraman , Zhiyun Xue , Sameer Antani

Ontology matching (OM) plays an essential role in enabling semantic interoperability and integration across heterogeneous knowledge sources, particularly in the biomedical domain which contains numerous complex concepts related to diseases…

人工智能 · 计算机科学 2026-04-03 Yiping Song , Jiaoyan Chen , Renate A. Schmidt