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How to effectively represent molecules is a long-standing challenge for molecular property prediction and drug discovery. This paper studies this problem and proposes to incorporate chemical domain knowledge, specifically related to…

机器学习 · 计算机科学 2023-05-04 Liang Zeng , Lanqing Li , Jian Li

The fusion of complementary multimodal information is crucial in computational pathology for accurate diagnostics. However, existing multimodal learning approaches necessitate access to users' raw data, posing substantial privacy risks.…

计算机视觉与模式识别 · 计算机科学 2024-02-27 Yuanzhe Peng , Jieming Bian , Jie Xu

Multimodal Attributed Graphs (MAGs) are ubiquitous in real-world applications, encompassing extensive knowledge through multimodal attributes attached to nodes (e.g., texts and images) and topological structure representing node…

机器学习 · 计算机科学 2025-02-28 Hao Yan , Chaozhuo Li , Jun Yin , Zhigang Yu , Weihao Han , Mingzheng Li , Zhengxin Zeng , Hao Sun , Senzhang Wang

Mathematical formulas are the crystallization of human wisdom in exploring the laws of nature for thousands of years. Describing the complex laws of nature with a concise mathematical formula is a constant pursuit of scientists and a great…

机器学习 · 计算机科学 2024-09-20 Yanjie Li , Jingyi Liu , Weijun Li , Lina Yu , Min Wu , Wenqiang Li , Meilan Hao , Su Wei , Yusong Deng

This study focuses on the feature extraction problem in multi-modal data regression. To address three core challenges in real-world scenarios: limited and non-IID data, effective extraction and fusion of multi-modal information, and…

机器学习 · 计算机科学 2025-12-03 Haozhe Wu

Prediction of molecular properties, including physico-chemical properties, is a challenging task in chemistry. Herein we present a new state-of-the-art multitask prediction method based on existing graph neural network models. We have used…

机器学习 · 计算机科学 2019-10-31 Fabio Capela , Vincent Nouchi , Ruud Van Deursen , Igor V. Tetko , Guillaume Godin

Property prediction on molecular graphs is an important application of Graph Neural Networks. Recently, unlabeled molecular data has become abundant, which facilitates the rapid development of self-supervised learning for GNNs in the…

机器学习 · 计算机科学 2023-10-31 Kha-Dinh Luong , Ambuj Singh

In the field of chemical structure recognition, the task of converting molecular images into machine-readable data formats such as SMILES string stands as a significant challenge, primarily due to the varied drawing styles and conventions…

计算机视觉与模式识别 · 计算机科学 2025-03-12 Yufan Chen , Ching Ting Leung , Yong Huang , Jianwei Sun , Hao Chen , Hanyu Gao

Molecular Representation Learning is essential to solving many drug discovery and computational chemistry problems. It is a challenging problem due to the complex structure of molecules and the vast chemical space. Graph representations of…

机器学习 · 计算机科学 2023-01-18 Atia Hamidizadeh , Tony Shen , Martin Ester

One of the most critical aspects of multimodal Reinforcement Learning (RL) is the effective integration of different observation modalities. Having robust and accurate representations derived from these modalities is key to enhancing the…

机器人学 · 计算机科学 2024-06-21 Fotios Lygerakis , Vedant Dave , Elmar Rueckert

Reliable molecular property prediction is essential for various scientific endeavors and industrial applications, such as drug discovery. However, the data scarcity, combined with the highly non-linear causal relationships between…

机器学习 · 计算机科学 2025-01-14 Yue Wan , Jialu Wu , Tingjun Hou , Chang-Yu Hsieh , Xiaowei Jia

Traditional federated learning uses the number of samples to calculate the weights of each client model and uses this fixed weight value to fusion the global model. However, in practical scenarios, each client's device and data…

机器学习 · 计算机科学 2024-03-20 Leiming Chen , Weishan Zhang , Cihao Dong , Sibo Qiao , Ziling Huang , Yuming Nie , Zhaoxiang Hou , Chee Wei Tan

This paper proposes a learning model, based on rank-fusion graphs, for general applicability in multimodal prediction tasks, such as multimodal regression and image classification. Rank-fusion graphs encode information from multiple…

计算机视觉与模式识别 · 计算机科学 2020-07-06 Icaro Cavalcante Dourado , Salvatore Tabbone , Ricardo da Silva Torres

Multimodal Federated Learning (MMFL) utilizes multiple modalities in each client to build a more powerful Federated Learning (FL) model than its unimodal counterpart. However, the impact of missing modality in different clients, also called…

机器学习 · 计算机科学 2024-02-09 Pramit Saha , Divyanshu Mishra , Felix Wagner , Konstantinos Kamnitsas , J. Alison Noble

Molecular editing aims to modify a given molecule to optimize desired chemical properties while preserving structural similarity. However, current approaches typically rely on string-based or continuous representations, which fail to…

机器学习 · 计算机科学 2025-05-27 Yuanxin Zhuang , Dazhong Shen , Ying Sun

Classification and identification of the materials lying over or beneath the Earth's surface have long been a fundamental but challenging research topic in geoscience and remote sensing (RS) and have garnered a growing concern owing to the…

计算机视觉与模式识别 · 计算机科学 2020-08-13 Danfeng Hong , Lianru Gao , Naoto Yokoya , Jing Yao , Jocelyn Chanussot , Qian Du , Bing Zhang

Machine learning has become a crucial tool for predicting the properties of crystalline materials. However, existing methods primarily represent material information by constructing multi-edge graphs of crystal structures, often overlooking…

机器学习 · 计算机科学 2024-11-14 Chao Huang , Chunyan Chen , Ling Shi , Chen Chen

Unlike traditional Multimodal Class-Incremental Learning (MCIL) methods that focus only on vision and text, this paper explores MCIL across vision, audio and text modalities, addressing challenges in integrating complementary information…

机器学习 · 计算机科学 2025-06-13 Yukun Chen , Zihuan Qiu , Fanman Meng , Hongliang Li , Linfeng Xu , Qingbo Wu

Molecular representation learning contributes to multiple downstream tasks such as molecular property prediction and drug design. To properly represent molecules, graph contrastive learning is a promising paradigm as it utilizes…

机器学习 · 计算机科学 2022-03-14 Yin Fang , Qiang Zhang , Haihong Yang , Xiang Zhuang , Shumin Deng , Wen Zhang , Ming Qin , Zhuo Chen , Xiaohui Fan , Huajun Chen

Statistical Relational Learning (SRL) models have attracted significant attention due to their ability to model complex data while handling uncertainty. However, most of these models have been limited to discrete domains due to their…

机器学习 · 计算机科学 2021-10-20 Yuqiao Chen , Sriraam Natarajan , Nicholas Ruozzi