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Static Application Security Testing (SAST) tools play a vital role in modern software development by automatically detecting potential vulnerabilities in source code. However, their effectiveness is often limited by a high rate of false…

软件工程 · 计算机科学 2026-03-12 Tom Ohlmer , Michael Schlichtig , Eric Bodden

Graphical models or networks describe the statistical dependence among multiple variables and are widely used in biology (e.g., gene regulatory networks). Under appropriate assumptions, directed edges may represent causal relationships. A…

统计方法学 · 统计学 2023-11-29 Evan A Martin , Audrey Qiuyan Fu

Graph classification is a critical research problem in many applications from different domains. In order to learn a graph classification model, the most widely used supervision component is an output layer together with classification loss…

机器学习 · 计算机科学 2021-01-15 Yuxiang Ren , Jiyang Bai , Jiawei Zhang

Self-supervised learning of graph neural networks (GNNs) aims to learn an accurate representation of the graphs in an unsupervised manner, to obtain transferable representations of them for diverse downstream tasks. Predictive learning and…

机器学习 · 计算机科学 2022-10-11 Dongki Kim , Jinheon Baek , Sung Ju Hwang

Chromosome recognition is an essential task in karyotyping, which plays a vital role in birth defect diagnosis and biomedical research. However, existing classification methods face significant challenges due to the inter-class similarity…

计算机视觉与模式识别 · 计算机科学 2023-12-14 Ruijia Chang , Suncheng Xiang , Chengyu Zhou , Kui Su , Dahong Qian , Jun Wang

Identifying transcription factor binding sites (TFBS) is crucial for understanding gene regulation, as these sites enable transcription factors (TFs) to bind to DNA and modulate gene expression. Despite advances in high-throughput…

机器学习 · 计算机科学 2025-03-18 Jonas Chris Ferrao , Dickson Dias , Sweta Morajkar , Manisha Gokuldas Fal Dessai

Graph prediction problems prevail in data analysis and machine learning. The inverse prediction problem, namely to infer input data from given output labels, is of emerging interest in various applications. In this work, we develop…

机器学习 · 统计学 2022-11-22 Chen Xu , Xiuyuan Cheng , Yao Xie

Developing accurate, transferable and computationally inexpensive machine learning models can rapidly accelerate the discovery and development of new materials. Some of the major challenges involved in developing such models are, (i)…

The recent focus on microbes in human medicine highlights their potential role in the genetic framework of diseases. To decode the complex interactions among genes, microbes, and diseases, computational predictions of gene-microbe-disease…

机器学习 · 计算机科学 2024-06-28 Kexin Zhang , Feng Huang , Luotao Liu , Zhankun Xiong , Hongyu Zhang , Yuan Quan , Wen Zhang

In the context of single domain generalisation, the objective is for models that have been exclusively trained on data from a single domain to demonstrate strong performance when confronted with various unfamiliar domains. In this paper, we…

计算机视觉与模式识别 · 计算机科学 2024-03-18 Anastasios Arsenos , Dimitrios Kollias , Evangelos Petrongonas , Christos Skliros , Stefanos Kollias

Weakly Supervised Object Detection (WSOD) with only image-level annotation has recently attracted wide attention. Many existing methods ignore the inter-image relationship of instances which share similar characteristics while can certainly…

计算机视觉与模式识别 · 计算机科学 2024-06-28 Yu Zhang , Chuang Zhu , Guoqing Yang , Siqi Chen

Although Convolutional neural networks (CNNs) are widely used for plant disease detection, they require a large number of training samples when dealing with wide variety of heterogeneous background. In this work, a CNN based dual phase…

计算机视觉与模式识别 · 计算机科学 2021-05-11 Tashin Ahmed , Chowdhury Rafeed Rahman , Md. Faysal Mahmud Abid

Graph neural networks (GNNs) are important tools for transductive learning tasks, such as node classification in graphs, due to their expressive power in capturing complex interdependency between nodes. To enable graph neural network…

机器学习 · 计算机科学 2022-05-17 Man Wu , Shirui Pan , Lan Du , Xingquan Zhu

Self-supervised learning has become a key method for training deep learning models when labeled data is scarce or unavailable. While graph machine learning holds great promise across various domains, the design of effective pretext tasks…

机器学习 · 计算机科学 2025-03-03 Amadou S. Sangare , Nicolas Dunou , Jhony H. Giraldo , Fragkiskos D. Malliaros

Many real-world graphs (networks) are heterogeneous with different types of nodes and edges. Heterogeneous graph embedding, aiming at learning the low-dimensional node representations of a heterogeneous graph, is vital for various…

社会与信息网络 · 计算机科学 2021-12-15 Wentao Xu , Yingce Xia , Weiqing Liu , Jiang Bian , Jian Yin , Tie-Yan Liu

This paper focuses on three critical problems on protein classification. Firstly, Carbohydrate-active enzyme (CAZyme) classification can help people to understand the properties of enzymes. However, one CAZyme may belong to several classes.…

生物大分子 · 定量生物学 2023-02-23 Zhuangwei Shi , Bo Li

Real-world graph data environments intrinsically exist noise (e.g., link and structure errors) that inevitably disturb the effectiveness of graph representation and downstream learning tasks. For homogeneous graphs, the latest works use…

机器学习 · 计算机科学 2024-12-25 Xiong Zhang , Cheng Xie , Haoran Duan , Beibei Yu

The first step toward Seed Phenotyping i.e. the comprehensive assessment of complex seed traits such as growth, development, tolerance, resistance, ecology, yield, and the measurement of pa-rameters that form more complex traits is the…

计算机视觉与模式识别 · 计算机科学 2021-03-30 Venkat Margapuri , Mitchell Neilsen

One important task in the study of information cascade is to predict the future recipients of a message given its past spreading trajectory. While the network structure serves as the backbone of the spreading, an accurate prediction can…

社会与信息网络 · 计算机科学 2022-03-18 Yansong Wang , Xiaomeng Wang , Radosław Michalski , Yijun Ran , Tao Jia

Graph representation learning aims to encode all nodes of a graph into low-dimensional vectors that will serve as input of many compute vision tasks. However, most existing algorithms ignore the existence of inherent data distribution and…

机器学习 · 计算机科学 2020-08-04 Shuai Zheng , Zhenfeng Zhu , Xingxing Zhang , Zhizhe Liu , Jian Cheng , Yao Zhao