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In this work, we propose a new deep learning model for Genomic Prediction (GP), which involves correlating genotypic data with phenotypic. The genotypes are typically fed as a sequence of characters to the 1D-Convolution Neural Network…

机器学习 · 计算机科学 2026-03-03 Kuldeep Pathak , Kapil Ahuja , Eric de Sturler

There is a growing interest in designing Graph Neural Networks (GNNs) for seeded graph matching, which aims to match two unlabeled graphs using only topological information and a small set of seed nodes. However, most previous GNNs for this…

机器学习 · 计算机科学 2023-07-11 Liren Yu , Jiaming Xu , Xiaojun Lin

Conditional Generative Adversarial Networks (cGANs) have been used in many image processing tasks. However, they still have serious problems maintaining the balance between conditioning the output on the input and creating the output with…

计算机视觉与模式识别 · 计算机科学 2021-09-14 Mohammadreza Naderi , Zahra Nabizadeh , Nader Karimi , Shahram Shirani , Shadrokh Samavi

Heterogeneous graph neural network (HGNN) is a very popular technique for the modeling and analysis of heterogeneous graphs. Most existing HGNN-based approaches are supervised or semi-supervised learning methods requiring graphs to be…

机器学习 · 计算机科学 2023-11-17 Cuiying Huo , Dongxiao He , Yawen Li , Di Jin , Jianwu Dang , Weixiong Zhang , Witold Pedrycz , Lingfei Wu

Driven by abundant satellite imagery, machine learning-based approaches have recently been promoted to generate high-resolution crop cultivation maps to support many agricultural applications. One of the major challenges faced by these…

计算机视觉与模式识别 · 计算机科学 2024-08-07 Yiqun Wang , Hui Huang , Radu State

Precise crop yield prediction is essential for improving agricultural practices and ensuring crop resilience in varying climates. Integrating weather data across the growing season, especially for different crop varieties, is crucial for…

机器学习 · 计算机科学 2023-09-25 Zahra Khalilzadeh , Motahareh Kashanian , Saeed Khaki , Lizhi Wang

Graph Neural Networks (GNNs) have shown remarkable capabilities in learning from graph-structured data with various applications such as social analysis and bioinformatics. However, the presence of label noise in real scenarios poses a…

机器学习 · 计算机科学 2026-01-27 Wei Ju , Wei Zhang , Siyu Yi , Zhengyang Mao , Yifan Wang , Jingyang Yuan , Zhiping Xiao , Ziyue Qiao , Ming Zhang

Conditional generative models, particularly diffusion-based methods, have recently been applied to graph prediction by modeling the target as a conditional distribution given the input graph, yielding competitive results compared to…

人工智能 · 计算机科学 2026-05-08 Shaozhen Ma , Wei Huang , Hanchen Wang , Dong Wen , Wenjie Zhang

Given a signed bipartite graph (SBG) G with two disjoint node sets U and V, the goal of link sign prediction is to predict the signs of potential links connecting U and V based on known positive and negative edges in G. The majority of…

机器学习 · 计算机科学 2025-08-28 Hewen Wang , Renchi Yang , Xiaokui Xiao

Recently brain networks have been widely adopted to study brain dynamics, brain development and brain diseases. Graph representation learning techniques on brain functional networks can facilitate the discovery of novel biomarkers for…

机器学习 · 计算机科学 2022-07-19 Haoteng Tang , Guixiang Ma , Lei Guo , Xiyao Fu , Heng Huang , Liang Zhang

Generative modeling of graphs with spatial structure is essential across many applications from computer graphics to spatial genomics. Recent flow-based generative models have achieved impressive results by gradually adding and then…

机器学习 · 计算机科学 2025-07-15 Peter Pao-Huang , Mitchell Black , Xiaojie Qiu

Link prediction in heterogeneous networks is crucial for understanding the intricacies of network structures and forecasting their future developments. Traditional methodologies often face significant obstacles, including…

计算工程、金融与科学 · 计算机科学 2025-01-07 Shengming Zhang , Le Zhang , Jingbo Zhou , Hui Xiong

SCGAN adds a similarity constraint between generated images and conditions as a regularization term on generative adversarial networks. Similarity constraint works as a tutor to instruct the generator network to comprehend the difference of…

计算机视觉与模式识别 · 计算机科学 2023-12-11 Iman Yazdanpanah , Ali Eslamian

Network embedding is aimed at mapping nodes in a network into low-dimensional vector representations. Graph Neural Networks (GNNs) have received widespread attention and lead to state-of-the-art performance in learning node representations.…

社会与信息网络 · 计算机科学 2023-03-17 Junjie Huang , Huawei Shen , Liang Hou , Xueqi Cheng

Graph-based Semi-Supervised Learning (SSL) aims to transfer the labels of a handful of labeled data to the remaining massive unlabeled data via a graph. As one of the most popular graph-based SSL approaches, the recently proposed Graph…

机器学习 · 计算机科学 2020-09-22 Sheng Wan , Shirui Pan , Jian Yang , Chen Gong

We propose a novel approach for visual representation learning called Signature-Graph Neural Networks (SGN). SGN learns latent global structures that augment the feature representation of Convolutional Neural Networks (CNN). SGN constructs…

计算机视觉与模式识别 · 计算机科学 2021-10-25 Ali Hamdi , Flora Salim , Du Yong Kim , Xiaojun Chang

The combination of deep learning algorithm and materials science has made significant progress in predicting novel materials and understanding various behaviours of materials. Here, we introduced a new model called as the Crystal…

材料科学 · 物理学 2024-05-21 Zijian Du , Luozhijie Jin , Le Shu , Yan Cen , Yuanfeng Xu , Yongfeng Mei , Hao Zhang

Gene regulatory networks (GRNs) are essential for understanding cell fate decisions and disease mechanisms, yet cross-species GRN inference from single-cell RNA-seq data remains challenging due to noise, sparsity, and cross-species…

基因组学 · 定量生物学 2026-01-19 Shuai Yan , Qingzhi Yu , Wengfeng Dai , Xiang Cheng

Identifying cancer driver genes (CDGs) is essential for understanding cancer mechanisms and developing targeted therapies. Graph neural networks (GNNs) have recently been employed to identify CDGs by capturing patterns in biological…

基因组学 · 定量生物学 2025-10-09 Bang Chen , Lijun Guo , Houli Fan , Wentao He , Rong Zhang

Within-frequency coupling (WFC) and cross-frequency coupling (CFC) in brain networks reflect neural synchronization within the same frequency band and cross-band oscillatory interactions, respectively. Their synergy provides a comprehensive…

神经元与认知 · 定量生物学 2025-04-30 Xiang Wang , Hui Xu , Jing Cai , Ta Zhou , Xibei Yang , Wei Xue