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Modern high-throughput sequencing technologies have enabled us to profile multiple molecular modalities from the same single cell, providing unprecedented opportunities to assay celluar heterogeneity from multiple biological layers.…

机器学习 · 统计学 2022-05-20 Pengcheng Zeng , Zhixiang Lin

The precise diagnosis is of great significance in developing precise treatment plans to restore neck function and reduce the burden posed by the cervical spondylosis (CS). However, the current available neck function assessment method are…

机器学习 · 计算机科学 2019-05-16 Nana Wang , Li Cui , Xi Huang , Yingcong Xiang , Jing Xiao , Yi Rao

Clustering is an important facet of explorative data mining and finds extensive use in several fields. In this paper, we propose an extension of the classical Fuzzy C-Means clustering algorithm. The proposed algorithm, abbreviated as VFC,…

计算机视觉与模式识别 · 计算机科学 2016-11-18 Srinjoy Ganguly , Digbalay Bose , Amit Konar

Data analysis plays an indispensable role for value creation in industry. Cluster analysis in this context is able to explore given datasets with little or no prior knowledge and to identify unknown patterns. As (big) data complexity…

机器学习 · 计算机科学 2021-06-25 Marc Wegmann , Domenique Zipperling , Jonas Hillenbrand , Jürgen Fleischer

Clustering techniques are often validated using benchmark datasets where class labels are used as ground-truth clusters. However, depending on the datasets, class labels may not align with the actual data clusters, and such misalignment…

机器学习 · 计算机科学 2025-03-04 Hyeon Jeon , Michaël Aupetit , DongHwa Shin , Aeri Cho , Seokhyeon Park , Jinwook Seo

We develop a Vector Quantized Spectral Clustering (VQSC) algorithm that is a combination of Spectral Clustering (SC) and Vector Quantization (VQ) sampling for grouping Soybean genomes. The inspiration here is to use SC for its accuracy and…

定量方法 · 定量生物学 2018-10-02 Aditya A. Shastri , Kapil Ahuja , Milind B. Ratnaparkhe , Aditya Shah , Aishwary Gagrani , Anant Lal

Single-cell RNA sequencing (scRNA-seq) is essential for unraveling cellular heterogeneity and diversity, offering invaluable insights for bioinformatics advancements. Despite its potential, traditional clustering methods in scRNA-seq data…

机器学习 · 计算机科学 2025-10-01 Ping Xu , Zhiyuan Ning , Meng Xiao , Guihai Feng , Xin Li , Yuanchun Zhou , Pengfei Wang

Agricultural research has accelerated in recent years, yet farmers often lack the time and resources for on-farm research due to the demands of crop production and farm operations. Seed classification offers valuable insights into quality…

计算机视觉与模式识别 · 计算机科学 2025-05-29 Elhoucine Elfatimia , Recep Eryigitb , Lahcen Elfatimi

The investigation of plant transcriptional regulation constitutes a fundamental basis for crop breeding, where cis-regulatory elements (CREs), as the key factor determining gene expression, have become the focus of crop genetic improvement…

基因组学 · 定量生物学 2025-05-16 Yingjun Wu , Jingyun Huang , Liang Ming , Pengcheng Deng , Maojun Wang , Zeyu Zhang

In this paper, we propose a novel learning paradigm called "DeepFlorist" for flower classification using ensemble learning as a meta-classifier. DeepFlorist combines the power of deep learning with the robustness of ensemble methods to…

计算机视觉与模式识别 · 计算机科学 2023-07-06 Afshin Khadangi

Deep clustering outperforms conventional clustering by mutually promoting representation learning and cluster assignment. However, most existing deep clustering methods suffer from two major drawbacks. First, most cluster assignment methods…

计算机视觉与模式识别 · 计算机科学 2022-02-23 Hanxuan Wang , Na Lu , Qinyang Liu

Deep clustering methods improve the performance of clustering tasks by jointly optimizing deep representation learning and clustering. While numerous deep clustering algorithms have been proposed, most of them rely on artificially…

机器学习 · 计算机科学 2024-01-30 Zhanwen Cheng , Feijiang Li , Jieting Wang , Yuhua Qian

Multiview clustering (MVC) aims to reveal the underlying structure of multiview data by categorizing data samples into clusters. Deep learning-based methods exhibit strong feature learning capabilities on large-scale datasets. For most…

计算机视觉与模式识别 · 计算机科学 2024-01-30 Jie Chen , Hua Mao , Wai Lok Woo , Xi Peng

Deep clustering can optimize representations of instances (i.e., representation learning) and explore the inherent data distribution (i.e., clustering) simultaneously, which demonstrates a superior performance over conventional clustering…

计算机视觉与模式识别 · 计算机科学 2023-11-27 Qi Qian

This paper considers the problem of evaluating clusterings of very large populations of items. Given two clusterings, namely a Baseline clustering and an Experiment clustering, the tasks are twofold: 1) characterize their differences, and…

信息检索 · 计算机科学 2024-08-01 Stephan van Staden , Alexander Grubb

Sickle cell anemia, which is characterized by abnormal erythrocyte morphology, can be detected using microscopic images. Computational techniques in medicine enhance the diagnosis and treatment efficiency. However, many computational…

计算机视觉与模式识别 · 计算机科学 2024-12-25 Victor Júnio Alcântara Cardoso , Rodrigo Moreira , João Fernando Mari , Larissa Ferreira Rodrigues Moreira

In this paper, we have proposed a deep quantum SVM formulation, and further demonstrated a quantum-clustering framework based on the quantum deep SVM formulation, deep convolutional neural networks, and quantum K-Means clustering. We have…

机器学习 · 计算机科学 2019-09-27 Arit Kumar Bishwas , Ashish Mani , Vasile Palade

Fair clustering is crucial for mitigating bias in unsupervised learning, yet existing algorithms often suffer from quadratic or super-quadratic computational complexity, rendering them impractical for large-scale datasets. To bridge this…

机器学习 · 计算机科学 2025-11-14 Shengfei Wei , Suyuan Liu , Jun Wang , Ke Liang , Miaomiao Li , Lei Luo

Technological advances facilitate the ability to acquire multimodal data, posing a challenge for recognition systems while also providing an opportunity to use the heterogeneous nature of the information to increase the generalization…

机器学习 · 计算机科学 2024-08-06 Paweł Zyblewski , Leandro L. Minku

Sequence labeling models often benefit from incorporating external knowledge. However, this practice introduces data heterogeneity and complicates the model with additional modules, leading to increased expenses for training a…

计算与语言 · 计算机科学 2025-06-19 Xuemei Tang , Jun Wang , Qi Su , Chu-ren Huang , Jinghang Gu