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Models invoking the chemical master equation are used in many areas of science, and, hence, their simulation is of interest to many researchers. The complexity of the problems at hand often requires considerable computational power, so a…

生物物理 · 物理学 2016-03-02 Fabian Spill , Philip K. Maini , Helen Byrne

Advanced manufacturing techniques have enabled the production of materials with state-of-the-art properties. In many cases however, the development of physics-based models of these techniques lags behind their use in the lab. This means…

机器学习 · 计算机科学 2021-12-06 Loc Truong , WoongJo Choi , Colby Wight , Lizzy Coda , Tegan Emerson , Keerti Kappagantula , Henry Kvinge

Switching between different levels of resolution is essential for multiscale modeling, but restoring details at higher resolution remains challenging. In our previous study we have introduced deepBackmap: a deep neural-network-based…

化学物理 · 物理学 2024-06-12 Marc Stieffenhofer , Tristan Bereau , Michael Wand

Retrosynthesis plays a crucial role in the fields of organic synthesis and drug development, where the goal is to identify suitable reactants that can yield a target product molecule. Although existing methods have achieved notable success,…

机器学习 · 计算机科学 2025-10-20 Jiaxi Zhuang , Yu Zhang , Yan Zhang , Ying Qian , Aimin Zhou

Do all instances need inference through the big models for a correct prediction? Perhaps not; some instances are easy and can be answered correctly by even small capacity models. This provides opportunities for improving the computational…

计算与语言 · 计算机科学 2022-10-12 Neeraj Varshney , Chitta Baral

Reaction prediction remains one of the major challenges for organic chemistry, and is a pre-requisite for efficient synthetic planning. It is desirable to develop algorithms that, like humans, "learn" from being exposed to examples of the…

化学物理 · 物理学 2017-06-01 Jennifer N. Wei , David Duvenaud , Alán Aspuru-Guzik

Multi-step time-series prediction is an essential supportive step for decision-makers in several industrial areas. Artificial intelligence techniques, which use a neural network component in various forms, have recently frequently been used…

机器学习 · 计算机科学 2025-12-11 Tony Salloom , Okyay Kaynak , Xinbo Yub , Wei He

Reliable predictions of the behaviour of chemical systems are essential across many industries, from nanoscale engineering over validation of advanced materials to nanotoxicity assessment in health and medicine. For the future we therefore…

化学物理 · 物理学 2021-03-05 Judith B. Rommel

Recent progress has expanded the use of large language models (LLMs) in drug discovery, including synthesis planning. However, objective evaluation of retrosynthesis performance remains limited. Existing benchmarks and metrics typically…

Scientific Machine Learning is transforming traditional engineering industries by enhancing the efficiency of existing technologies and accelerating innovation, particularly in modeling chemical reactions. Despite recent advancements, the…

机器学习 · 计算机科学 2024-08-21 Imran Nasim , Joaõ Lucas de Sousa Almeida

This paper introduces a new platform to accelerate the modeling of complex aerothermochemical interactions in new turbomachines, turbo-reactors, to decarbonise chemical processes. While previous work has aerothermally demonstrated the…

计算工程、金融与科学 · 计算机科学 2025-02-13 Dylan Rubini , Budimir Rosic

Retrosynthesis prediction aims to infer the reactant molecule based on a given product molecule, which is a fundamental task in chemical synthesis. However, existing models rely on static pattern-matching paradigm, which limits their…

机器学习 · 计算机科学 2025-12-08 Xinyi Li , Sai Wang , Yutian Lin , Yu Wu , Yi Yang

Computational protein-protein interaction (PPI) prediction techniques can contribute greatly in reducing time, cost and false-positive interactions compared to experimental approaches. Sequence is one of the key and primary information of…

机器学习 · 计算机科学 2022-03-29 Soumyadeep Debnath , Ayatullah Faruk Mollah

Datasets in the Natural Sciences are often curated with the goal of aiding scientific understanding and hence may not always be in a form that facilitates the application of machine learning. In this paper, we identify three trends within…

化学物理 · 物理学 2021-05-07 Ryan-Rhys Griffiths , Philippe Schwaller , Alpha A. Lee

Bayesian models quantify uncertainty and facilitate optimal decision-making in downstream applications. For most models, however, practitioners are forced to use approximate inference techniques that lead to sub-optimal decisions due to…

机器学习 · 统计学 2019-09-12 Tomasz Kuśmierczyk , Joseph Sakaya , Arto Klami

Chemical reactions are the fundamental building blocks of drug design and organic chemistry research. In recent years, there has been a growing need for a large-scale deep-learning framework that can efficiently capture the basic rules of…

机器学习 · 计算机科学 2024-03-08 Bo Qiang , Yiran Zhou , Yuheng Ding , Ningfeng Liu , Song Song , Liangren Zhang , Bo Huang , Zhenming Liu

Retrosynthetic planning is a fundamental task in organic chemistry, yet remains challenging due to its combinatorial complexity. To address this, conventional approaches typically rely on hybrid frameworks that combine single-step…

人工智能 · 计算机科学 2026-04-01 Chenyang Zuo , Siqi Fan , Yizhen Luo , Zaiqing Nie

Progress in computer-aided synthesis planning (CASP) is obscured by the lack of standardized evaluation infrastructure and the reliance on metrics that prioritize topological completion over chemical validity. We introduce RetroCast, a…

机器学习 · 计算机科学 2025-12-09 Anton Morgunov , Victor S. Batista

Several different methods exist for efficient approximation of paths in multiscale stochastic chemical systems. Another approach is to use bursts of stochastic simulation to estimate the parameters of a stochastic differential equation…

数值分析 · 数学 2014-12-19 Simon Cotter , Radek Erban

Deployed machine learning models should be updated to take advantage of a larger sample size to improve performance, as more data is gathered over time. Unfortunately, even when model updates improve aggregate metrics such as accuracy, they…

机器学习 · 计算机科学 2023-05-09 George Adam , Benjamin Haibe-Kains , Anna Goldenberg