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Deep learning forms a hierarchical network structure for representation of multiple input features. The adaptive structural learning method of Deep Belief Network (DBN) can realize a high classification capability while searching the…

神经与进化计算 · 计算机科学 2019-10-01 Shin Kamada , Takumi Ichimura

In this paper we address the problem of protein classification starting from a multi-view 2D representation of proteins. From each 3D protein structure, a large set of 2D projections is generated using the protein visualization software…

计算机视觉与模式识别 · 计算机科学 2019-10-30 Loris Nanni , Alessandra Lumini , Federica Pasquali , Sheryl Brahnam

Link prediction plays an important role in network analysis and applications. Recently, approaches for link prediction have evolved from traditional similarity-based algorithms into embedding-based algorithms. However, most existing…

社会与信息网络 · 计算机科学 2020-08-11 Lei Wang , Jing Ren , Bo Xu , Jianxin Li , Wei Luo , Feng Xia

This paper proposes a novel deep reinforcement learning (RL) architecture, called Value Prediction Network (VPN), which integrates model-free and model-based RL methods into a single neural network. In contrast to typical model-based RL…

人工智能 · 计算机科学 2017-11-08 Junhyuk Oh , Satinder Singh , Honglak Lee

Deep learning has deeply influenced protein science, enabling breakthroughs in predicting protein properties, higher-order structures, and molecular interactions. This paper introduces DeepProtein, a comprehensive and user-friendly deep…

机器学习 · 计算机科学 2025-06-17 Jiaqing Xie , Tianfan Fu

Model reprogramming adapts pretrained models to downstream tasks by modifying only the input and output spaces. Visual reprogramming (VR) is one instance for vision tasks that adds a trainable noise pattern (i.e., a visual prompt) to input…

机器学习 · 计算机科学 2025-06-03 Chengyi Cai , Zesheng Ye , Lei Feng , Jianzhong Qi , Feng Liu

Click-through rate prediction is an essential task in industrial applications, such as online advertising. Recently deep learning based models have been proposed, which follow a similar Embedding\&MLP paradigm. In these methods large scale…

机器学习 · 统计学 2018-09-14 Guorui Zhou , Chengru Song , Xiaoqiang Zhu , Ying Fan , Han Zhu , Xiao Ma , Yanghui Yan , Junqi Jin , Han Li , Kun Gai

Accurately predicting individual neurons' responses and spatial functional properties in complex visual tasks remains a key challenge in understanding neural computation. Existing whole-brain connectome models of Drosophila often rely on…

神经元与认知 · 定量生物学 2025-12-09 Jiangping Xie , Ruohan Ren , Xiao Zhou , Ao Zheng , Jiasong Zhu , Wenyu Jiang , Ziran Zhao

The deep reinforcement learning (DRL) based Volt-VAR optimization (VVO) methods have been widely studied for active distribution networks (ADNs). However, most of them lack safety guarantees in terms of power injection uncertainties due to…

系统与控制 · 电气工程与系统科学 2024-09-30 Zhengrong Chen , Siyao Cai , A. P. Sakis Meliopoulos

This study considers multiple reconfigurable intelligent surfaces (RISs)-aided multiuser downlink systems with the goal of jointly optimizing the transmitter precoding and RIS phase shift matrix to maximize spectrum efficiency. Unlike prior…

信息论 · 计算机科学 2025-10-01 Po-Heng Chou , Bo-Ren Zheng , Wan-Jen Huang , Walid Saad , Yu Tsao , Ronald Y. Chang

Federated Learning (FL) is a distributed learning technique that maintains data privacy by providing a decentralized training method for machine learning models using distributed big data. This promising Federated Learning approach has also…

机器学习 · 计算机科学 2024-11-11 Prakash Chourasia , Tamkanat E Ali , Sarwan Ali , Murray Pattersn

We describe a machine learning method for predicting the value of a real-valued function, given the values of multiple input variables. The method induces solutions from samples in the form of ordered disjunctive normal form (DNF) decision…

人工智能 · 计算机科学 2014-11-17 S. M. Weiss , N. Indurkhya

Message-passing graph neural networks (MPNNs) and structural features (SFs) are cornerstones for the link prediction task. However, as a common and intuitive mode of understanding, the potential of visual perception has been overlooked in…

计算机视觉与模式识别 · 计算机科学 2025-06-09 Yanbin Wei , Xuehao Wang , Zhan Zhuang , Yang Chen , Shuhao Chen , Yulong Zhang , Yu Zhang , James Kwok

Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein functions. Recent sequence representation learning methods based on Protein Language Models (PLMs) excel in sequence-based…

定量方法 · 定量生物学 2023-10-19 Zuobai Zhang , Chuanrui Wang , Minghao Xu , Vijil Chenthamarakshan , Aurélie Lozano , Payel Das , Jian Tang

We present a novel dual-head deep learning architecture for protein-protein interaction modeling that enables simultaneous prediction of binding affinity ($\Delta G$) and mutation-induced affinity changes ($\Delta\Delta G$) using only…

定量方法 · 定量生物学 2025-09-30 Supantha Dey , Ratul Chowdhury

Large Vision-Language Models (LVLMs) or multimodal large language models represent a significant advancement in artificial intelligence, enabling systems to understand and generate content across both visual and textual modalities. While…

机器学习 · 计算机科学 2025-09-09 Thanh Thi Nguyen , Campbell Wilson , Janis Dalins

The temporal dynamics of a complex system such as a social network or a communication network can be studied by understanding the patterns of link appearance and disappearance over time. A critical task along this understanding is to…

社会与信息网络 · 计算机科学 2018-04-17 Mahmudur Rahman , Tanay Kumar Saha , Mohammad Al Hasan , Kevin S. Xu , Chandan K. Reddy

A random vector functional link network (RVFL) is widely used as a universal approximator for classification and regression problems. The big advantage of RVFL is fast training without backpropagation. This is because the weights and biases…

机器学习 · 计算机科学 2020-03-31 Grzegorz Dudek

Despite significant progress in static protein structure collection and prediction, the dynamic behavior of proteins, one of their most vital characteristics, has been largely overlooked in prior research. This oversight can be attributed…

We discuss probabilistic methods for predicting protein functions from protein-protein interaction networks. Previous work based on Markov Randon Fields is extended and compared to a general machine-learning theoretic approach. Using actual…

分子网络 · 定量生物学 2007-05-23 Christoph Best , Ralf Zimmer , Joannis Apostolakis
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