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UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a…

机器学习 · 计算机科学 2021-08-31 Tim Sainburg , Leland McInnes , Timothy Q Gentner

Nonlinear dimensional reduction with the manifold assumption, often called manifold learning, has proven its usefulness in a wide range of high-dimensional data analysis. The significant impact of t-SNE and UMAP has catalyzed intense…

机器学习 · 计算机科学 2026-04-02 Jungeum Kim , Xiao Wang

Recently a variety of methods have been developed to encode graphs into low-dimensional vectors that can be easily exploited by machine learning algorithms. The majority of these methods start by embedding the graph nodes into a…

机器学习 · 计算机科学 2018-09-13 Yu Jin , Joseph F. JaJa

A fundamental problem in supervised learning is to find a good set of features or distance measures. If the new set of features is of lower dimensionality and can be obtained by a simple transformation of the original data, they can make…

机器学习 · 计算机科学 2024-05-15 Anri Patron , Ayush Prasad , Hoang Phuc Hau Luu , Kai Puolamäki

Learning unsupervised node embeddings facilitates several downstream tasks such as node classification and link prediction. A node embedding is universal if it is designed to be used by and benefit various downstream tasks. This work…

机器学习 · 计算机科学 2021-03-05 Vassilis N. Ioannidis , Da Zheng , George Karypis

Uniform Manifold Approximation and Projection (UMAP) is a widely used manifold learning technique for dimensionality reduction. This paper studies UMAP, supervised UMAP, and several competing dimensionality reduction methods, including…

机器学习 · 计算机科学 2026-05-04 Guanzhe Zhang , Shanshan Ding , Zhezhen Jin

Prompt tuning methods for Graph Neural Networks (GNNs) have become popular to address the semantic gap between pre-training and fine-tuning steps. However, existing GNN prompting methods rely on labeled data and involve lightweight…

机器学习 · 计算机科学 2025-05-23 Peyman Baghershahi , Sourav Medya

Graph representation learning based on graph neural networks (GNNs) can greatly improve the performance of downstream tasks, such as node and graph classification. However, the general GNN models do not aggregate node information in a…

机器学习 · 计算机科学 2020-07-30 Fei Ding , Xiaohong Zhang , Justin Sybrandt , Ilya Safro

Previous studies have demonstrated the strong performance of Graph Neural Networks (GNNs) in node classification. However, most existing GNNs adopt a node-centric perspective and rely on global message passing, leading to high computational…

机器学习 · 计算机科学 2026-01-14 Qian Zeng , Xin Lin , Jingyi Gao , Yang Yu

Unsupervised feature selection is an important method to reduce dimensions of high dimensional data without labels, which is benefit to avoid ``curse of dimensionality'' and improve the performance of subsequent machine learning tasks, like…

机器学习 · 计算机科学 2020-12-29 Yanyong Huang , Zongxin Shen , Fuxu Cai , Tianrui Li , Fengmao Lv

Annotating histopathological images is a time-consuming andlabor-intensive process, which requires broad-certificated pathologistscarefully examining large-scale whole-slide images from cells to tissues.Recent frontiers of transfer learning…

计算机视觉与模式识别 · 计算机科学 2020-08-24 Dou Xu , Chang Cai , Chaowei Fang , Bin Kong , Jihua Zhu , Zhongyu Li

Graph representation learning is a fast-growing field where one of the main objectives is to generate meaningful representations of graphs in lower-dimensional spaces. The learned embeddings have been successfully applied to perform various…

机器学习 · 计算机科学 2021-12-21 Md. Khaledur Rahman , Ariful Azad

Nonlinear dimensionality reduction methods have demonstrated top-notch performance in many pattern recognition and image classification tasks. Despite their popularity, they suffer from highly expensive time and memory requirements, which…

计算几何 · 计算机科学 2014-04-08 Amir Najafi , Amir Joudaki , Emad Fatemizadeh

Subgraph representation learning based on Graph Neural Network (GNN) has exhibited broad applications in scientific advancements, such as predictions of molecular structure-property relationships and collective cellular function. In…

机器学习 · 计算机科学 2022-10-17 Yili Shen , Xiao Liu , Cheng-Wei Ju , Jiaxu Yan , Jun Yi , Zhou Lin , Hui Guan

We introduce a novel approach to graph-level representation learning, which is to embed an entire graph into a vector space where the embeddings of two graphs preserve their graph-graph proximity. Our approach, UGRAPHEMB, is a general…

机器学习 · 计算机科学 2019-06-04 Yunsheng Bai , Hao Ding , Yang Qiao , Agustin Marinovic , Ken Gu , Ting Chen , Yizhou Sun , Wei Wang

Inspired by the extensive success of deep learning, graph neural networks (GNNs) have been proposed to learn expressive node representations and demonstrated promising performance in various graph learning tasks. However, existing endeavors…

机器学习 · 计算机科学 2022-04-05 Kaize Ding , Jianling Wang , James Caverlee , Huan Liu

Linearized Graph Neural Networks (GNNs) have attracted great attention in recent years for graph representation learning. Compared with nonlinear Graph Neural Network (GNN) models, linearized GNNs are much more time-efficient and can…

机器学习 · 计算机科学 2023-02-02 Yulin Zhu , Xing Ai , Qimai Li , Xiao-Ming Wu , Kai Zhou

Recently there has been a significant effort to automate UV mapping, the process of mapping 3D-dimensional surfaces to the UV space while minimizing distortion and seam length. Although state-of-the-art methods, Autocuts and OptCuts,…

图形学 · 计算机科学 2020-12-04 Fatemeh Teimury , Bruno Roy , Juan Sebastián Casallas , David MacDonald , Mark Coates

Graph neural networks (GNNs) demonstrate a robust capability for representation learning on graphs with complex structures, showcasing superior performance in various applications. The majority of existing GNNs employ a graph convolution…

机器学习 · 计算机科学 2025-02-19 Jinlu Wang , Jipeng Guo , Yanfeng Sun , Junbin Gao , Shaofan Wang , Yachao Yang , Baocai Yin

Graph neural networks (GNNs) are deep learning models designed specifically for graph data, and they typically rely on node features as the input to the first layer. When applying such a type of network on the graph without node features,…

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