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Drug combinations are frequently used for the treatment of cancer patients in order to increase efficacy, decrease adverse side effects, or overcome drug resistance. Given the enormous number of drug combinations, it is cost- and…

分子网络 · 定量生物学 2021-02-18 Peiran Jiang , Shujun Huang , Zhenyuan Fu , Zexuan Sun , Ted M. Lakowski , Pingzhao Hu

Graph neural networks (GNNs) have shown advantages in graph-based analysis tasks. However, most existing methods have the homogeneity assumption and show poor performance on heterophilic graphs, where the linked nodes have dissimilar…

机器学习 · 计算机科学 2024-04-16 Tianhao Peng , Wenjun Wu , Haitao Yuan , Zhifeng Bao , Zhao Pengrui , Xin Yu , Xuetao Lin , Yu Liang , Yanjun Pu

Graph Convolution Network (GCN) has attracted significant attention and become the most popular method for learning graph representations. In recent years, many efforts have been focused on integrating GCN into the recommender tasks and…

机器学习 · 计算机科学 2020-07-14 Kang Liu , Feng Xue , Richang Hong

Graph Convolutional Networks (GCNs) achieve great success in non-Euclidean structure data processing recently. In existing studies, deeper layers are used in CCNs to extract deeper features of Euclidean structure data. However, for…

机器学习 · 计算机科学 2022-03-14 Junhua Ma , Jiajun Li , Xueming Li , Xu Li

Graph neural networks (GNNs) have revolutionized the field of machine learning on non-Euclidean data such as graphs and networks. GNNs effectively implement node representation learning through neighborhood aggregation and achieve…

机器学习 · 计算机科学 2024-04-30 Zehao Dong , Muhan Zhang , Yixin Chen

Deep learning methods for graphs have seen rapid progress in recent years with much focus awarded to generalising Convolutional Neural Networks (CNN) to graph data. CNNs are typically realised by alternating convolutional and pooling layers…

机器学习 · 计算机科学 2020-06-04 Yaniv Shulman

Graph neural networks (GNNs) have gained significant attention in recent years for their ability to process data that may be represented as graphs. This has prompted several studies to explore their representational capability based on the…

机器学习 · 计算机科学 2025-10-15 Brian Godwin Lim , Galvin Brice Sy Lim , Renzo Roel Tan , Kazushi Ikeda

Graph learning (GL) can dynamically capture the distribution structure (graph structure) of data based on graph convolutional networks (GCN), and the learning quality of the graph structure directly influences GCN for semi-supervised…

计算机视觉与模式识别 · 计算机科学 2020-06-01 Guangfeng Lin , Xiaobing Kang , Kaiyang Liao , Fan Zhao , Yajun Chen

Graph neural networks (GNNs) are powerful models that have been successful in various graph representation learning tasks. Whereas gradient boosted decision trees (GBDT) often outperform other machine learning methods when faced with…

机器学习 · 计算机科学 2021-04-01 Sergei Ivanov , Liudmila Prokhorenkova

Deep subspace clustering (DSC) networks based on self-expressive model learn representation matrix, often implemented in terms of fully connected network, in the embedded space. After the learning is finished, representation matrix is used…

计算机视觉与模式识别 · 计算机科学 2024-01-31 Lovro Sindičić , Ivica Kopriva

Graph representation learning has attracted increasing research attention. However, most existing studies fuse all structural features and node attributes to provide an overarching view of graphs, neglecting finer substructures' semantics,…

机器学习 · 计算机科学 2021-05-25 Qingyun Sun , Jianxin Li , Hao Peng , Jia Wu , Yuanxing Ning , Phillip S. Yu , Lifang He

In this work, we study the problem of partitioning a set of graphs into different groups such that the graphs in the same group are similar while the graphs in different groups are dissimilar. This problem was rarely studied previously,…

机器学习 · 计算机科学 2023-02-07 Jinyu Cai , Yi Han , Wenzhong Guo , Jicong Fan

A main challenge in mining network-based data is finding effective ways to represent or encode graph structures so that it can be efficiently exploited by machine learning algorithms. Several methods have focused in network representation…

社会与信息网络 · 计算机科学 2019-03-18 Leonardo Gutiérrez-Gómez , Jean-Charles Delvenne

Subgraph pattern detection aims to uncover complex interaction structures in graphs. However, state-of-the-art graph neural network (GNN)-based solutions assume centralized access to the entire graph. When graphs are instead distributed…

机器学习 · 计算机科学 2026-05-08 Selin Ceydeli , Rui Wang , Kubilay Atasu

Temporal graph clustering is a complex task that involves discovering meaningful structures in dynamic graphs where relationships and entities change over time. Existing methods typically require centralized data collection, which poses…

机器学习 · 计算机科学 2025-03-04 Zihao Zhou , Yang Liu , Xianghong Xu , Qian Li

A large number of real-world graphs or networks are inherently heterogeneous, involving a diversity of node types and relation types. Heterogeneous graph embedding is to embed rich structural and semantic information of a heterogeneous…

社会与信息网络 · 计算机科学 2020-04-01 Xinyu Fu , Jiani Zhang , Ziqiao Meng , Irwin King

Recent progress in aspect-level sentiment classification has been propelled by the incorporation of graph neural networks (GNNs) leveraging syntactic structures, particularly dependency trees. Nevertheless, the performance of these models…

计算与语言 · 计算机科学 2023-12-08 Jane Sunny , Tom Padraig , Roggie Terry , Woods Ali

Graph representation learning is a fast-growing field where one of the main objectives is to generate meaningful representations of graphs in lower-dimensional spaces. The learned embeddings have been successfully applied to perform various…

机器学习 · 计算机科学 2021-12-21 Md. Khaledur Rahman , Ariful Azad

Accurate cell type annotation is a crucial step in analyzing single-cell RNA sequencing (scRNA-seq) data, which provides valuable insights into cellular heterogeneity. However, due to the high dimensionality and prevalence of zero elements…

机器学习 · 计算机科学 2025-08-14 Huifa Li , Jie Fu , Xinlin Zhuang , Haolin Yang , Xinpeng Ling , Tong Cheng , Haochen xue , Imran Razzak , Zhili Chen

Graph Neural Networks (GNNs) with numerical node features and graph structure as inputs have demonstrated superior performance on various supervised learning tasks with graph data. However the numerical node features utilized by GNNs are…

机器学习 · 计算机科学 2022-06-20 Jiuhai Chen , Jonas Mueller , Vassilis N. Ioannidis , Tom Goldstein , David Wipf