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Small-molecule identification from tandem mass spectrometry (MS/MS) remains a bottleneck in untargeted settings where spectral libraries are incomplete. While deep learning offers a solution, current approaches typically fall into two…

机器学习 · 计算机科学 2026-03-05 Yinkai Wang , Yan Zhou Chen , Xiaohui Chen , Li-Ping Liu , Soha Hassoun

Brain encoding models aim to predict brain voxel-wise responses to stimuli images, replicating brain signals captured by neuroimaging techniques. There is a large volume of publicly available data, but training a comprehensive brain…

计算机视觉与模式识别 · 计算机科学 2023-07-27 Huzheng Yang , Jianbo Shi , James Gee

As a technology to read brain states from measurable brain activities, brain decoding are widely applied in industries and medical sciences. In spite of high demands in these applications for a universal decoder that can be applied to all…

机器学习 · 统计学 2015-02-03 Sotetsu Koyamada , Yumi Shikauchi , Ken Nakae , Masanori Koyama , Shin Ishii

Can artificial intelligence unlock the secrets of the human brain? How do the inner mechanisms of deep learning models relate to our neural circuits? Is it possible to enhance AI by tapping into the power of brain recordings? These…

神经元与认知 · 定量生物学 2024-12-31 Subba Reddy Oota , Zijiao Chen , Manish Gupta , Raju S. Bapi , Gael Jobard , Frederic Alexandre , Xavier Hinaut

Brain decoding involves the determination of a subject's cognitive state or an associated stimulus from functional neuroimaging data measuring brain activity. In this setting the cognitive state is typically characterized by an element of a…

机器学习 · 统计学 2015-04-14 Nicole Croteau , Farouk S. Nathoo , Jiguo Cao , Ryan Budney

Sparse encoders offer high-precision retrieval by representing term importance within a vocabulary space, yet their English-centric structures pose a critical impediment to language transfer for non-English languages. To overcome this…

信息检索 · 计算机科学 2026-05-26 Seongtae Hong , Youngjoon Jang , Jia-Heui Ju , Hyeonseok Moon , Heuiseok Lim

Recent advances in fMRI-based image reconstruction have achieved remarkable photo-realistic fidelity. Yet, a persistent limitation remains: while reconstructed images often appear naturalistic and holistically similar to the target stimuli,…

计算机视觉与模式识别 · 计算机科学 2026-01-27 Lan Yang , Minghan Yang , Ke Li , Honggang Zhang , Kaiyue Pang , Yi-Zhe Song

Existing evaluation protocols for brain visual decoding predominantly rely on coarse metrics that obscure inter-model differences, lack neuroscientific foundation, and fail to capture fine-grained visual distinctions. To address these…

计算机视觉与模式识别 · 计算机科学 2025-12-02 Weihao Xia , Cengiz Oztireli

A fundamental challenge in neuroscience is to decode mental states from brain activity. While functional magnetic resonance imaging (fMRI) offers a non-invasive approach to capture brain-wide neural dynamics with high spatial precision,…

图像与视频处理 · 电气工程与系统科学 2025-07-31 Yueh-Po Peng , Vincent K. M. Cheung , Li Su

Whole-brain parcellation from MRI is a critical yet challenging task due to the complexity of subdividing the brain into numerous small, irregular shaped regions. Traditionally, template-registration methods were used, but recent advances…

计算机视觉与模式识别 · 计算机科学 2026-01-15 Yucheng Li , Xiaofan Wang , Junyi Wang , Yijie Li , Xi Zhu , Mubai Du , Dian Sheng , Wei Zhang , Fan Zhang

Diffusion MRI is a powerful tool that serves as a bridge between brain microstructure and cognition. Recent advancements in cognitive neuroscience have highlighted the persistent challenge of understanding how individual differences in…

神经元与认知 · 定量生物学 2024-09-25 Gabriela Gómez Jiménez , Demian Wassermann

Reconstructing perceived images from human brain activity monitored by functional magnetic resonance imaging (fMRI) is hard, especially for natural images. Existing methods often result in blurry and unintelligible reconstructions with low…

计算机视觉与模式识别 · 计算机科学 2022-05-31 Mali Halac , Murat Isik , Hasan Ayaz , Anup Das

Multi-site MRI studies often suffer from site-specific variations arising from differences in methodology, hardware, and acquisition protocols, thereby compromising accuracy and reliability in clinical AI/ML tasks. We present PRISM…

图像与视频处理 · 电气工程与系统科学 2024-11-12 Sarang Galada , Tanurima Halder , Kunal Deo , Ram P Krish , Kshitij Jadhav

Decoding visual-semantic information from brain signals, such as functional MRI (fMRI), across different subjects poses significant challenges, including low signal-to-noise ratio, limited data availability, and cross-subject variability.…

计算机视觉与模式识别 · 计算机科学 2024-09-27 Ruizhe Zheng , Lichao Sun

Recently, visual encoding and decoding based on functional magnetic resonance imaging (fMRI) have realized many achievements with the rapid development of deep network computation. Despite the hierarchically similar representations of deep…

神经元与认知 · 定量生物学 2019-03-20 Kai Qiao , Jian Chen , Linyuan Wang , Chi Zhang , Lei Zeng , Li Tong , Bin Yan

AI-based neural decoding reconstructs visual perception by leveraging generative models to map brain activity, measured through functional MRI (fMRI), into latent hierarchical representations. Traditionally, ridge linear models transform…

图像与视频处理 · 电气工程与系统科学 2025-09-04 Lorenzo Veronese , Andrea Moglia , Luca Mainardi , Pietro Cerveri

Brain-computer interfaces (BCIs) enable direct communication between the brain and external devices. This review highlights the core decoding algorithms that enable multimodal BCIs, including a dissection of the elements, a unified view of…

人机交互 · 计算机科学 2025-02-06 Siyang Li , Hongbin Wang , Xiaoqing Chen , Dongrui Wu

The past few years have seen remarkable progress in the decoding of speech from brain activity, primarily driven by large single-subject datasets. However, due to individual variation, such as anatomy, and differences in task design and…

机器学习 · 计算机科学 2025-06-03 Dulhan Jayalath , Gilad Landau , Brendan Shillingford , Mark Woolrich , Oiwi Parker Jones

Recent progress in brain-guided image generation has improved the quality of fMRI-based reconstructions; however, fundamental challenges remain in preserving object-level structure and semantic fidelity. Many existing approaches overlook…

图像与视频处理 · 电气工程与系统科学 2026-04-14 Mohammad Moradi , Morteza Moradi , Marco Grassia , Giuseppe Mangioni

With the advent of brain imaging techniques and machine learning tools, much effort has been devoted to building computational models to capture the encoding of visual information in the human brain. One of the most challenging brain…

计算机视觉与模式识别 · 计算机科学 2021-11-29 Zarina Rakhimberdina , Quentin Jodelet , Xin Liu , Tsuyoshi Murata