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Genomic studies face a vast hypothesis space, while interventions such as gene perturbations remain costly and time-consuming. To accelerate such experiments, gene perturbation models predict the transcriptional outcome of interventions.…

定量方法 · 定量生物学 2025-10-21 George Panagopoulos , Johannes F. Lutzeyer , Sofiane Ennadir , Michalis Vazirgiannis , Jun Pang

Many artificial intelligence (AI) devices have been developed to accelerate the training and inference of neural networks models. The most common ones are the Graphics Processing Unit (GPU) and Tensor Processing Unit (TPU). They are highly…

机器学习 · 计算机科学 2022-10-25 xiangyang Ju , Yunsong Wang , Daniel Murnane , Nicholas Choma , Steven Farrell , Paolo Calafiura

GPU architectural simulation is orders of magnitude slower than native execution, necessitating workload sampling for practical speedups. Existing methods rely on hand-crafted features with limited expressiveness, yielding either aggressive…

性能 · 计算机科学 2026-03-03 Jiaqi Wang , Jingwei Sun , Jiyu Luo , Han Li , Guangzhong Sun

Sparse data structures are commonly used in neural networks to reduce the memory footprint. These data structures are compact but cause irregularities such as random memory accesses, which prevent efficient use of the memory hierarchy. GPUs…

编程语言 · 计算机科学 2025-06-19 Hossein Albakri , Kazem Cheshmi

Many emerging cyber-physical systems, such as autonomous vehicles and robots, rely heavily on artificial intelligence and machine learning algorithms to perform important system operations. Since these highly parallel applications are…

分布式、并行与集群计算 · 计算机科学 2023-02-07 An Zou , Jing Li , Christopher D. Gill , Xuan Zhang

In Computer Vision, problem of identifying or classifying the objects present in an image is called Object Categorization. It is a challenging problem, especially when the images have clutter background, occlusions or different lighting…

计算机视觉与模式识别 · 计算机科学 2016-04-26 Jyothi Korra

Tensor computations present significant performance challenges that impact a wide spectrum of applications ranging from machine learning, healthcare analytics, social network analysis, data mining to quantum chemistry and signal processing.…

分布式、并行与集群计算 · 计算机科学 2020-01-06 Jiajia Li , Mahesh Lakshminarasimhan , Xiaolong Wu , Ang Li , Catherine Olschanowsky , Kevin Barker

In the last few years, several deep learning models, especially Generative Adversarial Networks have received a lot of attention for the task of Single Image Super-Resolution (SISR). These methods focus on building an end-to-end framework,…

图像与视频处理 · 电气工程与系统科学 2020-10-12 Vibhu Bhatia , Yatender Kumar

The rapid adoption of Large Language Models (LLMs) has made GPU inference efficiency an increasingly critical system concern. The runtime of LLM workloads is largely dominated by tile-based kernels, particularly General Matrix…

Finding an informative subset of a large collection of data points or models is at the center of many problems in computer vision, recommender systems, bio/health informatics as well as image and natural language processing. Given pairwise…

机器学习 · 计算机科学 2016-04-12 Ehsan Elhamifar , Guillermo Sapiro , S. Shankar Sastry

Randomized neural networks for representation learning have consistently achieved prominent results in texture recognition tasks, effectively combining the advantages of both traditional techniques and learning-based approaches. However,…

计算机视觉与模式识别 · 计算机科学 2025-10-06 Ricardo T. Fares , Lucas C. Ribas

We consider the two-group classification problem and propose a kernel classifier based on the optimal scoring framework. Unlike previous approaches, we provide theoretical guarantees on the expected risk consistency of the method. We also…

机器学习 · 统计学 2021-04-01 Alexander F. Lapanowski , Irina Gaynanova

Sparse matrix-vector multiplication (SpMV) is a crucial computing kernel with widespread applications in iterative algorithms. Over the past decades, research on SpMV optimization has made remarkable strides, giving rise to various…

分布式、并行与集群计算 · 计算机科学 2024-04-10 Jianhua Gao , Bingjie Liu , Weixing Ji , Hua Huang

Many problems in scientific and engineering applications contain sparse matrices or graphs as main input objects, e.g. numerical simulations on meshes. Large inputs are abundant these days and require parallel processing for memory size and…

分布式、并行与集群计算 · 计算机科学 2020-11-23 Charilaos Tzovas , Maria Predari , Henning Meyerhenke

Graph kernels have been successfully applied to many graph classification problems. Typically, a kernel is first designed, and then an SVM classifier is trained based on the features defined implicitly by this kernel. This two-stage…

Optimizing GPU kernels for high performance is a complex task, often demanding deep architectural knowledge, extensive profiling, and iterative experimentation. This challenge is amplified when targeting newer or less-documented GPU…

机器学习 · 计算机科学 2025-08-25 Martin Andrews , Sam Witteveen

Any applied mathematical model contains parameters. The paper proposes to use kernel learning for the parametric analysis of the model. The approach consists in setting a distribution on the parameter space, obtaining a finite training…

最优化与控制 · 数学 2025-01-27 Vladimir Norkin , Alois Pichler

GPU-based HPC clusters are attracting more scientific application developers due to their extensive parallelism and energy efficiency. In order to achieve portability among a variety of multi/many core architectures, a popular choice for an…

分布式、并行与集群计算 · 计算机科学 2023-04-10 Ali TehraniJamsaz , Alok Mishra , Akash Dutta , Abid M. Malik , Barbara Chapman , Ali Jannesari

Sparse linear algebra kernels play a critical role in numerous applications, covering from exascale scientific simulation to large-scale data analytics. Offloading linear algebra kernels on one GPU will no longer be viable in these…

分布式、并行与集群计算 · 计算机科学 2022-09-19 Jieyang Chen , Chenhao Xie , Jesun S Firoz , Jiajia Li , Shuaiwen Leon Song , Kevin Barker , Mark Raugas , Ang Li

Inference and learning of graphical models are both well-studied problems in statistics and machine learning that have found many applications in science and engineering. However, exact inference is intractable in general graphical models,…

机器学习 · 统计学 2015-02-04 Jason K. Johnson , Diane Oyen , Michael Chertkov , Praneeth Netrapalli