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Bayesian inference provides a natural framework for updating knowledge as new information becomes available, often in a sequential manner by incorporating datasets in stages or reusing previous posteriors as priors. In practice, this is…

核理论 · 物理学 2026-05-22 Lipei Du

Traditional language models treat language as a finite state automaton on a probability space over words. This is a very strong assumption when modeling something inherently complex such as language. In this paper, we challenge this by…

计算与语言 · 计算机科学 2016-04-04 Kushal Arora , Anand Rangarajan

The paradigm of large language models in natural language processing (NLP) has also shown promise in modeling biological languages, including proteins, RNA, and DNA. Both the auto-regressive generation paradigm and evaluation metrics have…

生物大分子 · 定量生物学 2025-07-04 Ke Liu , Shuaike Shen , Hao Chen

Imagine being able to ask questions to a black box model such as "Which adversarial examples exist?", "Does a specific attribute have a disproportionate effect on the model's prediction?" or "What kind of predictions could possibly be made…

机器学习 · 计算机科学 2021-05-19 Laurens Devos , Wannes Meert , Jesse Davis

Linguists have long held that a key aspect of natural language syntax is the recursive organization of language units into constituent structures, and research has suggested that current state-of-the-art language models lack an inherent…

计算与语言 · 计算机科学 2024-11-27 Michael Ginn

Just as physicists strive to develop a TOE (theory of everything), which explains and unifies the physical laws of the universe, the life-scientist wishes to uncover the TOE as it relates to cellular systems. This can only be achieved with…

Counterfactual explanations are usually generated through heuristics that are sensitive to the search's initial conditions. The absence of guarantees of performance and robustness hinders trustworthiness. In this paper, we take a…

机器学习 · 计算机科学 2021-06-28 Axel Parmentier , Thibaut Vidal

The Software Naturalness hypothesis argues that programming languages can be understood through the same techniques used in natural language processing. We explore this hypothesis through the use of a pre-trained transformer-based language…

Recent work raises concerns about the use of standard splits to compare natural language processing models. We propose a Bayesian statistical model comparison technique which uses k-fold cross-validation across multiple data sets to…

计算与语言 · 计算机科学 2020-10-08 Piotr Szymański , Kyle Gorman

Principal component analysis is an important pattern recognition and dimensionality reduction tool in many applications. Principal components are computed as eigenvectors of a maximum likelihood covariance $\widehat{\Sigma}$ that…

统计理论 · 数学 2017-10-30 Raphael Hauser , Raul Kangro , Jüri Lember , Heinrich Matzinger

We propose a novel method for automatic program synthesis. P-Tree Programming represents the program search space through a single probabilistic prototype tree. From this prototype tree we form program instances which we evaluate on a given…

人工智能 · 计算机科学 2017-07-13 Christian Oesch

The statistical over-representation of phonological features in the basic vocabulary of languages is often interpreted as reflecting potentially universal sound symbolic patterns. However, most of those results have not been tested…

计算与语言 · 计算机科学 2026-03-03 Frederic Blum

Keyphrase extraction is the process of automatically selecting a small set of most relevant phrases from a given text. Supervised keyphrase extraction approaches need large amounts of labeled training data and perform poorly outside the…

计算与语言 · 计算机科学 2023-01-03 Tim Schopf , Simon Klimek , Florian Matthes

A growing body of work studies how to answer a question or verify a claim by generating a natural language "proof": a chain of deductive inferences yielding the answer based on a set of premises. However, these methods can only make sound…

计算与语言 · 计算机科学 2022-11-02 Zayne Sprague , Kaj Bostrom , Swarat Chaudhuri , Greg Durrett

In molecular phylogeny, relationships among organisms are reconstructed using DNA or protein sequences and are displayed as trees. A linear increase in the number of sequences results in an exponential increase of possible trees. Thus,…

基因组学 · 定量生物学 2007-05-23 Kerstin Hoef-Emden

Phylogenetics is now fundamental in life sciences, providing insights into the earliest branches of life and the origins and spread of epidemics. However, finding suitable phylogenies from the vast space of possible trees remains…

种群与进化 · 定量生物学 2024-01-24 Matthew J Penn , Neil Scheidwasser , Joseph Penn , Christl A Donnelly , David A Duchêne , Samir Bhatt

The paper proposes a novel model assessment paradigm aiming to address shortcoming of posterior predictive $p-$values, which provide the default metric of fit for Bayesian structural equation modelling (BSEM). The model framework of the…

统计方法学 · 统计学 2022-06-30 Konstantinos Vamvourellis , Konstantinos Kalogeropoulos , Irini Moustaki

The web-scale of pretraining data has created an important evaluation challenge: to disentangle linguistic competence on cases well-represented in pretraining data from generalization to out-of-domain language, specifically the dynamic,…

Principal component analysis (PCA) is often used for analyzing data in the most diverse areas. In this work, we report an integrated approach to several theoretical and practical aspects of PCA. We start by providing, in an intuitive and…

计算工程、金融与科学 · 计算机科学 2021-06-09 Felipe L. Gewers , Gustavo R. Ferreira , Henrique F. de Arruda , Filipi N. Silva , Cesar H. Comin , Diego R. Amancio , Luciano da F. Costa

We model the recursive production property of context-free grammars for natural and synthetic languages. To this end, we present a dynamic programming algorithm that marginalises over latent binary tree structures with $N$ leaves, allowing…

计算与语言 · 计算机科学 2020-10-12 Shawn Tan , Yikang Shen , Timothy J. O'Donnell , Alessandro Sordoni , Aaron Courville