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Heterogeneous graph neural networks (HGNNs) have attracted increasing research interest in recent three years. Most existing HGNNs fall into two classes. One class is meta-path-based HGNNs which either require domain knowledge to handcraft…

机器学习 · 计算机科学 2022-09-02 Nan Wu , Chaofan Wang

Real-world graph data environments intrinsically exist noise (e.g., link and structure errors) that inevitably disturb the effectiveness of graph representation and downstream learning tasks. For homogeneous graphs, the latest works use…

机器学习 · 计算机科学 2024-12-25 Xiong Zhang , Cheng Xie , Haoran Duan , Beibei Yu

Graph Neural Networks (GNNs) combine node attributes over a fixed granularity of the local graph structure around a node to predict its label. However, different nodes may relate to a node-level property with a different granularity of its…

机器学习 · 计算机科学 2025-06-19 Kartik Sharma , Vineeth Rakesh , Yingtong Dou , Srijan Kumar , Mahashweta Das

In graph neural networks (GNNs), message passing iteratively aggregates nodes' information from their direct neighbors while neglecting the sequential nature of multi-hop node connections. Such sequential node connections e.g., metapaths,…

Advanced graph neural networks have shown great potentials in graph classification tasks recently. Different from node classification where node embeddings aggregated from local neighbors can be directly used to learn node labels, graph…

机器学习 · 计算机科学 2022-03-16 Hao Jia , Junzhong Ji , Minglong Lei

In this paper, we propose a semi-supervised deep learning method for detecting the specific types of reads that impede the de novo genome assembly process. Instead of dealing directly with sequenced reads, we analyze their coverage graphs…

机器学习 · 计算机科学 2019-04-24 Tomislav Šebrek , Jan Tomljanović , Josip Krapac , Mile Šikić

Graph representation learning based on graph neural networks (GNNs) can greatly improve the performance of downstream tasks, such as node and graph classification. However, the general GNN models do not aggregate node information in a…

机器学习 · 计算机科学 2020-07-30 Fei Ding , Xiaohong Zhang , Justin Sybrandt , Ilya Safro

In practical domains, high-dimensional data are usually associated with diverse semantic labels, whereas traditional feature selection methods are designed for single-label data. Moreover, existing multi-label methods encounter two main…

机器学习 · 计算机科学 2025-05-26 Yan Zhong , Xingyu Wu , Xinping Zhao , Li Zhang , Xinyuan Song , Lei Shi , Bingbing Jiang

Graph Anomaly Detection (GAD) plays a vital role in various data mining applications such as e-commerce fraud prevention and malicious user detection. Recently, Graph Neural Network (GNN) based approach has demonstrated great effectiveness…

机器学习 · 计算机科学 2025-03-18 Hang Ni , Jindong Han , Nengjun Zhu , Hao Liu

The complicated syntax structure of natural language is hard to be explicitly modeled by sequence-based models. Graph is a natural structure to describe the complicated relation between tokens. The recent advance in Graph Neural Networks…

计算与语言 · 计算机科学 2019-09-19 Wei Li , Shuheng Li , Shuming Ma , Yancheng He , Deli Chen , Xu Sun

A quest to determine the complete sequence of a human DNA from telomere to telomere started three decades ago and was finally completed in 2021. This accomplishment was a result of a tremendous effort of numerous experts who engineered…

基因组学 · 定量生物学 2022-06-03 Lovro Vrček , Xavier Bresson , Thomas Laurent , Martin Schmitz , Mile Šikić

In many real-world network datasets such as co-authorship, co-citation, email communication, etc., relationships are complex and go beyond pairwise. Hypergraphs provide a flexible and natural modeling tool to model such complex…

机器学习 · 计算机科学 2019-05-23 Naganand Yadati , Madhav Nimishakavi , Prateek Yadav , Vikram Nitin , Anand Louis , Partha Talukdar

Graphs naturally lend themselves to model the complexities of Hyperspectral Image (HSI) data as well as to serve as semi-supervised classifiers by propagating given labels among nearest neighbours. In this work, we present a novel framework…

计算机视觉与模式识别 · 计算机科学 2021-11-01 Madeleine Kotzagiannidis , Carola-Bibiane Schönlieb

Graph Neural Networks (GNNs) are effective tools for graph representation learning. Most GNNs rely on a recursive neighborhood aggregation scheme, named message passing, thereby their theoretical expressive power is limited to the…

机器学习 · 计算机科学 2023-09-19 Dingmin Wang , Shengchao Liu , Hanchen Wang , Bernardo Cuenca Grau , Linfeng Song , Jian Tang , Song Le , Qi Liu

We consider the problem of detecting robotic grasps in an RGB-D view of a scene containing objects. In this work, we apply a deep learning approach to solve this problem, which avoids time-consuming hand-design of features. This presents…

机器学习 · 计算机科学 2014-08-22 Ian Lenz , Honglak Lee , Ashutosh Saxena

We present a new method to regularize graph neural networks (GNNs) for better generalization in graph classification. Observing that the omission of sub-structures does not necessarily change the class label of the whole graph, we develop…

社会与信息网络 · 计算机科学 2020-09-23 Yiwei Wang , Wei Wang , Yuxuan Liang , Yujun Cai , Bryan Hooi

Graph Self-Supervised Learning (GSSL) provides a robust pathway for acquiring embeddings without expert labelling, a capability that carries profound implications for molecular graphs due to the staggering number of potential molecules and…

机器学习 · 计算机科学 2023-10-19 Hanchen Wang , Jean Kaddour , Shengchao Liu , Jian Tang , Joan Lasenby , Qi Liu

Motivation: Laboratory gene regulatory data for a species are sporadic. Despite the abundance of gene regulatory network algorithms that employ single data sets, few algorithms can combine the vast but disperse sources of data and extract…

基因组学 · 定量生物学 2020-08-17 Mehrzad Saremi , Maryam Amirmazlaghani

Graph convolutional neural networks (GCNs) generalize tradition convolutional neural networks (CNNs) from low-dimensional regular graphs (e.g., image) to high dimensional irregular graphs (e.g., text documents on word embeddings). Due to…

机器学习 · 计算机科学 2021-03-30 Mehrnaz Najafi , Philip S. Yu

Graph Neural Networks (GNNs) have achieved remarkable performance in modeling graphs for various applications. However, most existing GNNs assume the graphs exhibit strong homophily in node labels, i.e., nodes with similar labels are…

机器学习 · 计算机科学 2023-02-20 Enyan Dai , Shijie Zhou , Zhimeng Guo , Suhang Wang