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End-to-end relation extraction (E2ERE) is an important task in information extraction, more so for biomedicine as scientific literature continues to grow exponentially. E2ERE typically involves identifying entities (or named entity…

计算与语言 · 计算机科学 2023-04-05 Xuguang Ai , Ramakanth Kavuluru

Recently, the performance of Pre-trained Language Models (PLMs) has been significantly improved by injecting knowledge facts to enhance their abilities of language understanding. For medical domains, the background knowledge sources are…

计算与语言 · 计算机科学 2021-08-23 Taolin Zhang , Zerui Cai , Chengyu Wang , Minghui Qiu , Bite Yang , Xiaofeng He

Although information extraction and coreference resolution appear together in many applications, most current systems perform them as ndependent steps. This paper describes an approach to integrated inference for extraction and coreference…

机器学习 · 计算机科学 2012-07-19 Ben Wellner , Andrew McCallum , Fuchun Peng , Michael Hay

In this study, we introduce ExBEHRT, an extended version of BEHRT (BERT applied to electronic health records), and apply different algorithms to interpret its results. While BEHRT considers only diagnoses and patient age, we extend the…

机器学习 · 计算机科学 2023-08-14 Maurice Rupp , Oriane Peter , Thirupathi Pattipaka

To solve the problem of redundant information and overlapping relations of the entity and relation extraction model, we propose a joint extraction model. This model can directly extract multiple pairs of related entities without generating…

计算与语言 · 计算机科学 2020-11-30 Yuanhao Shen , Jungang Han

Document-level relation extraction aims to extract relations among entities within a document. Compared with its sentence-level counterpart, Document-level relation extraction requires inference over multiple sentences to extract complex…

计算与语言 · 计算机科学 2022-08-05 Liang Zhang , Yidong Cheng

Joint entity and relation extraction plays a pivotal role in various applications, notably in the construction of knowledge graphs. Despite recent progress, existing approaches often fall short in two key aspects: richness of representation…

计算与语言 · 计算机科学 2024-04-22 Urchade Zaratiana , Nadi Tomeh , Yann Dauxais , Pierre Holat , Thierry Charnois

Background : Knowledge is evolving over time, often as a result of new discoveries or changes in the adopted methods of reasoning. Also, new facts or evidence may become available, leading to new understandings of complex phenomena. This is…

计算与语言 · 计算机科学 2023-04-24 Ayoub Harnoune , Maryem Rhanoui , Mounia Mikram , Siham Yousfi , Zineb Elkaimbillah , Bouchra El Asri

We introduce EXIT, an extractive context compression framework that enhances both the effectiveness and efficiency of retrieval-augmented generation (RAG) in question answering (QA). Current RAG systems often struggle when retrieval models…

计算与语言 · 计算机科学 2025-05-30 Taeho Hwang , Sukmin Cho , Soyeong Jeong , Hoyun Song , SeungYoon Han , Jong C. Park

Biomedical research is growing at such an exponential pace that scientists, researchers, and practitioners are no more able to cope with the amount of published literature in the domain. The knowledge presented in the literature needs to be…

人工智能 · 计算机科学 2024-07-09 Nikola Milosevic , Wolfgang Thielemann

We propose a joint event and temporal relation extraction model with shared representation learning and structured prediction. The proposed method has two advantages over existing work. First, it improves event representation by allowing…

计算与语言 · 计算机科学 2020-09-17 Rujun Han , Qiang Ning , Nanyun Peng

Research in CDCR remains fragmented due to heterogeneous dataset formats, varying annotation standards, and the predominance of the CDCR definition as the event coreference resolution (ECR). To address these challenges, we introduce uCDCR,…

计算与语言 · 计算机科学 2026-03-04 Anastasia Zhukova , Terry Ruas , Jan Philip Wahle , Bela Gipp

Recently BERT has been adopted for document encoding in state-of-the-art text summarization models. However, sentence-based extractive models often result in redundant or uninformative phrases in the extracted summaries. Also, long-range…

计算与语言 · 计算机科学 2020-04-28 Jiacheng Xu , Zhe Gan , Yu Cheng , Jingjing Liu

Document-level relation extraction (DocRE) aims to extract semantic relations among entity pairs in a document. Typical DocRE methods blindly take the full document as input, while a subset of the sentences in the document, noted as the…

计算与语言 · 计算机科学 2022-03-08 Yiqing Xie , Jiaming Shen , Sha Li , Yuning Mao , Jiawei Han

Document-level relation extraction is to extract relation facts from a document consisting of multiple sentences, in which pronoun crossed sentences are a ubiquitous phenomenon against a single sentence. However, most of the previous works…

计算与语言 · 计算机科学 2022-02-23 Zhongxuan Xue , Rongzhen Li , Qizhu Dai , Zhong Jiang

Document-level Relation Extraction (RE) requires extracting relations expressed within and across sentences. Recent works show that graph-based methods, usually constructing a document-level graph that captures document-aware interactions,…

计算与语言 · 计算机科学 2021-06-08 Damai Dai , Jing Ren , Shuang Zeng , Baobao Chang , Zhifang Sui

BERT-based text ranking models have dramatically advanced the state-of-the-art in ad-hoc retrieval, wherein most models tend to consider individual query-document pairs independently. In the mean time, the importance and usefulness to…

信息检索 · 计算机科学 2021-04-20 Xiaoyang Chen , Kai Hui , Ben He , Xianpei Han , Le Sun , Zheng Ye

An exhaustive study has been conducted to investigate span-based models for the joint entity and relation extraction task. However, these models sample a large number of negative entities and negative relations during the model training,…

计算与语言 · 计算机科学 2022-08-19 Bin Ji , Hao Xu , Jie Yu , Shasha Li , Jun Ma , Yuke Ji , Huijun Liu

End-to-end relation extraction aims to identify named entities and extract relations between them. Most recent work models these two subtasks jointly, either by casting them in one structured prediction framework, or performing multi-task…

计算与语言 · 计算机科学 2021-03-24 Zexuan Zhong , Danqi Chen

Extracting medical knowledge from healthcare texts enhances downstream tasks like medical knowledge graph construction and clinical decision-making. However, the construction and application of knowledge extraction models lack automation,…

人工智能 · 计算机科学 2023-10-05 Hongxin Ding , Peinie Zou , Zhiyuan Wang , Junfeng Zhao , Yasha Wang , Qiang Zhou