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We argue that Transformers are essentially graph-to-graph models, with sequences just being a special case. Attention weights are functionally equivalent to graph edges. Our Graph-to-Graph Transformer architecture makes this ability…

计算与语言 · 计算机科学 2023-10-30 James Henderson , Alireza Mohammadshahi , Andrei C. Coman , Lesly Miculicich

Recent research has demonstrated the efficacy of pre-training graph neural networks (GNNs) to capture the transferable graph semantics and enhance the performance of various downstream tasks. However, the semantic knowledge learned from…

机器学习 · 计算机科学 2023-12-19 Mouxiang Chen , Zemin Liu , Chenghao Liu , Jundong Li , Qiheng Mao , Jianling Sun

Convolutional Neural Networks(CNNs) has achieved remarkable performance breakthrough in Euclidean structure data. Recently, aggregation-transformation based Graph Neural networks(GNNs) gradually produce a powerful performance on…

机器学习 · 计算机科学 2021-02-05 Jingzhao Hu , Xiaoqi Zhang , Qiaomei Jia , Chen Wang , Qirong Bu , Jun Feng

Graph Gaussian Processes (GGPs) provide a data-efficient solution on graph structured domains. Existing approaches have focused on static structures, whereas many real graph data represent a dynamic structure, limiting the applications of…

机器学习 · 计算机科学 2021-11-04 David Blanco-Mulero , Markus Heinonen , Ville Kyrki

Molecular property prediction with deep learning has gained much attention over the past years. Owing to the scarcity of labeled molecules, there has been growing interest in self-supervised learning methods that learn generalizable…

机器学习 · 计算机科学 2023-09-04 Peizhen Bai , Xianyuan Liu , Haiping Lu

Graph Neural Networks (GNN) have been extensively used to extract meaningful representations from graph structured data and to perform predictive tasks such as node classification and link prediction. In recent years, there has been a lot…

图像与视频处理 · 电气工程与系统科学 2020-07-10 Arijit Sehanobish , Neal G. Ravindra , David van Dijk

Graph neural networks (GNN) are powerful models for many graph-structured tasks. Existing models often assume that the complete structure of the graph is available during training. In practice, however, graph-structured data is usually…

机器学习 · 计算机科学 2022-03-29 Chen Wang , Yuheng Qiu , Dasong Gao , Sebastian Scherer

Graph structure learning is a well-established problem that aims at optimizing graph structures adaptive to specific graph datasets to help message passing neural networks (i.e., GNNs) to yield effective and robust node embeddings. However,…

机器学习 · 计算机科学 2023-06-21 Wentao Zhao , Qitian Wu , Chenxiao Yang , Junchi Yan

As the demand for user privacy grows, controlled data removal (machine unlearning) is becoming an important feature of machine learning models for data-sensitive Web applications such as social networks and recommender systems.…

机器学习 · 计算机科学 2023-07-04 Chao Pan , Eli Chien , Olgica Milenkovic

Recently, graph-based models designed for downstream tasks have significantly advanced research on graph neural networks (GNNs). GNN baselines based on neural message-passing mechanisms such as GCN and GAT perform worse as the network…

机器学习 · 计算机科学 2023-01-26 Jiayuan Chen , Xiang Zhang , Yinfei Xu , Tianli Zhao , Renjie Xie , Wei Xu

Graph deep learning has recently emerged as a powerful ML concept allowing to generalize successful deep neural architectures to non-Euclidean structured data. Such methods have shown promising results on a broad spectrum of applications…

机器学习 · 计算机科学 2022-05-16 Anees Kazi , Luca Cosmo , Seyed-Ahmad Ahmadi , Nassir Navab , Michael Bronstein

We build a Generative Pre-trained Transformer (GPT) model from scratch to solve sequential decision making tasks arising in contexts of operations research and management science which we call OMGPT. We first propose a general sequence…

机器学习 · 计算机科学 2025-05-21 Hanzhao Wang , Guanting Chen , Kalyan Talluri , Xiaocheng Li

Meta-learning extracts common knowledge from learning different tasks and uses it for unseen tasks. It can significantly improve tasks that suffer from insufficient training data, e.g., few shot learning. In most meta-learning methods,…

机器学习 · 计算机科学 2019-11-06 Lu Liu , Tianyi Zhou , Guodong Long , Jing Jiang , Chengqi Zhang

Dynamic graph neural networks (DGNNs) have emerged and been widely deployed in various web applications (e.g., Reddit) to serve users (e.g., personalized content delivery) due to their remarkable ability to learn from complex and dynamic…

机器学习 · 计算机科学 2025-02-04 He Zhang , Bang Wu , Xiangwen Yang , Xingliang Yuan , Xiaoning Liu , Xun Yi

At present, there are a large number of quantum neural network models to deal with Euclidean spatial data, while little research have been conducted on non-Euclidean spatial data. In this paper, we propose a novel quantum graph…

信号处理 · 电气工程与系统科学 2021-07-08 Jin Zheng , Qing Gao , Yanxuan Lv

Deep learning methods for graphs achieve remarkable performance on many node-level and graph-level prediction tasks. However, despite the proliferation of the methods and their success, prevailing Graph Neural Networks (GNNs) neglect…

机器学习 · 计算机科学 2020-11-10 Emily Alsentzer , Samuel G. Finlayson , Michelle M. Li , Marinka Zitnik

Graph prediction problems prevail in data analysis and machine learning. The inverse prediction problem, namely to infer input data from given output labels, is of emerging interest in various applications. In this work, we develop…

机器学习 · 统计学 2022-11-22 Chen Xu , Xiuyuan Cheng , Yao Xie

The shape of a molecule determines its physicochemical and biological properties. However, it is often underrepresented in standard molecular representation learning approaches. Here, we propose using the Euler Characteristic Transform…

机器学习 · 计算机科学 2025-07-08 Victor Toscano-Duran , Florian Rottach , Bastian Rieck

Large language models (LLMs) such as generative pretrained transformers (GPTs) have shown potential for various commercial applications, but their applicability for materials design remains underexplored. In this article, we introduce…

材料科学 · 物理学 2024-07-02 Kamal Choudhary

Recently, pretraining methods for the Graph Neural Networks (GNNs) have been successful at learning effective representations from unlabeled graph data. However, most of these methods rely on pairwise relations in the graph and do not…

机器学习 · 计算机科学 2023-11-21 Abdalgader Abubaker , Takanori Maehara , Madhav Nimishakavi , Vassilis Plachouras