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A graph is a powerful concept for representation of relations between pairs of entities. Data with underlying graph structure can be found across many disciplines and there is a natural desire for understanding such data better. Deep…

机器学习 · 计算机科学 2019-01-25 Martin Simonovsky

Machine learning techniques have recently been adopted in various applications in medicine, biology, chemistry, and material engineering. An important task is to predict the properties of molecules, which serves as the main subroutine in…

机器学习 · 计算机科学 2019-11-12 Shengchao Liu , Mehmet Furkan Demirel , Yingyu Liang

The discovery and analysis of network patterns are central to the scientific enterprise. In the present work, we developed and evaluated a new approach that learns the building blocks of graphs that can be used to understand and generate…

社会与信息网络 · 计算机科学 2018-02-26 Salvador Aguinaga , David Chiang , Tim Weninger

Graph-language models (GLMs) have demonstrated great potential in graph-based semi-supervised learning. A typical GLM consists of two key stages: graph generation and text embedding, which are usually implemented by inferring a latent graph…

计算与语言 · 计算机科学 2025-02-24 Jianglin Lu , Yixuan Liu , Yitian Zhang , Yun Fu

Graph embedding provides an efficient solution for graph analysis by converting the graph into a low-dimensional space which preserves the structure information. In contrast to the graph structure data, the i.i.d. node embedding can be…

机器学习 · 计算机科学 2017-05-16 Hongyun Cai , Vincent W. Zheng , Kevin Chen-Chuan Chang

Graphs are a fundamental abstraction for modeling relational data. However, graphs are discrete and combinatorial in nature, and learning representations suitable for machine learning tasks poses statistical and computational challenges. In…

机器学习 · 统计学 2019-05-16 Aditya Grover , Aaron Zweig , Stefano Ermon

Modeling generative process of growing graphs has wide applications in social networks and recommendation systems, where cold start problem leads to new nodes isolated from existing graph. Despite the emerging literature in learning graph…

机器学习 · 计算机科学 2019-06-03 Da Xu , Chuanwei Ruan , Kamiya Motwani , Evren Korpeoglu , Sushant Kumar , Kannan Achan

Attributed graph embedding, which learns vector representations from graph topology and node features, is a challenging task for graph analysis. Recently, methods based on graph convolutional networks (GCNs) have made great progress on this…

机器学习 · 计算机科学 2020-07-06 Ganqu Cui , Jie Zhou , Cheng Yang , Zhiyuan Liu

Due to their capacity to encode rich structural information, labeled graphs are often used for modeling various kinds of objects such as images, molecules, and chemical compounds. If pattern recognition problems such as clustering and…

数据结构与算法 · 计算机科学 2019-08-02 David B. Blumenthal

Neuro-encoded expression programming(NEEP) that aims to offer a novel continuous representation of combinatorial encoding for genetic programming methods is proposed in this paper. Genetic programming with linear representation uses…

神经与进化计算 · 计算机科学 2021-04-12 Aftab Anjum , Fengyang Sun , Lin Wang , Jeff Orchard

Generative models of graph structure have applications in biology and social sciences. The state of the art is GraphRNN, which decomposes the graph generation process into a series of sequential steps. While effective for modest sizes, it…

机器学习 · 计算机科学 2019-10-18 Tony Duan , Juho Lee

Graph analysis is a critical component of applications such as online social networks, protein interactions in biological networks, and Internet traffic analysis. The arrival of massive graphs with hundreds of millions of nodes, e.g. social…

社会与信息网络 · 计算机科学 2015-03-19 Xiaohan Zhao , Alessandra Sala , Haitao Zheng , Ben Y. Zhao

Graph Edit Distance (GED) is a fundamental, albeit NP-hard, metric for structural graph similarity. Recent neural graph matching architectures approximate GED by first encoding graphs with a Graph Neural Network (GNN) and then applying…

机器学习 · 计算机科学 2026-05-08 Jyotirmaya Shivottam , Subhankar Mishra

In genome-scale constraint-based metabolic models, gene deletion strategies are essential for achieving growth-coupled production, where cell growth and target metabolite synthesis occur simultaneously. Despite the inherently networked…

定量方法 · 定量生物学 2026-04-10 Ziwei Yang , Takeyuki Tamura

Graphs are a representation of structured data that captures the relationships between sets of objects. With the ubiquity of available network data, there is increasing industrial and academic need to quickly analyze graphs with billions of…

机器学习 · 计算机科学 2023-07-28 Brandon Mayer , Anton Tsitsulin , Hendrik Fichtenberger , Jonathan Halcrow , Bryan Perozzi

Among various distance functions for graphs, graph and subgraph edit distances (GED and SED respectively) are two of the most popular and expressive measures. Unfortunately, exact computations for both are NP-hard. To overcome this…

Graph encoder embedding, a recent technique for graph data, offers speed and scalability in producing vertex-level representations from binary graphs. In this paper, we extend the applicability of this method to a general graph model, which…

机器学习 · 统计学 2024-10-24 Cencheng Shen

Recently developed deep neural models like NetGAN, CELL, and Variational Graph Autoencoders have made progress but face limitations in replicating key graph statistics on generating large graphs. Diffusion-based methods have emerged as…

机器学习 · 计算机科学 2023-10-31 Mingyang Wu , Xiaohui Chen , Li-Ping Liu

Face parsing infers a pixel-wise label to each facial component, which has drawn much attention recently. Previous methods have shown their efficiency in face parsing, which however overlook the correlation among different face regions. The…

计算机视觉与模式识别 · 计算机科学 2020-07-23 Gusi Te , Yinglu Liu , Wei Hu , Hailin Shi , Tao Mei

Most large language models (LLMs) today excel at generating raw, sequential code with minimal abstractions and custom structures. However, there has been little work on graph-based abstract code generation, where significant logic is…

计算与语言 · 计算机科学 2025-10-16 Nyx Iskandar , Hisham Bedri , Andy Tsen