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Robust machine learning for regulatory genomics is studied under biologically and technically induced distribution shifts. Deep convolutional and attention based models achieve strong in distribution performance on DNA regulatory sequence…

基因组学 · 定量生物学 2026-02-20 Yiyao Yang

Current generative models for drug discovery primarily use molecular docking to evaluate the quality of generated compounds. However, such models are often not useful in practice because even compounds with high docking scores do not…

生物大分子 · 定量生物学 2024-02-19 Peter Eckmann , Dongxia Wu , Germano Heinzelmann , Michael K Gilson , Rose Yu

Neutron reflectometry (NR) is a powerful technique to probe surfaces and interfaces. NR is inherently an indirect measurement technique, access to the physical quantities of interest (layer thickness, scattering length density, roughness),…

Various neural network architectures are used in many of the state-of-the-art approaches for real-time nonlinear state estimation. With the ever-increasing incorporation of these data-driven models into the estimation domain, model…

机器人学 · 计算机科学 2025-11-12 Devin Hunter , Chinwendu Enyioha

The accurate but fast calculation of molecular excited states is still a very challenging topic. For many applications, detailed knowledge of the energy funnel in larger molecular aggregates is of key importance requiring highly accurate…

化学物理 · 物理学 2024-01-12 Vivin Vinod , Sayan Maity , Peter Zaspel , Ulrich Kleinekathöfer

Controlling instabilities in complex dynamical systems is challenging in scientific and engineering applications. Deep reinforcement learning (DRL) has seen promising results for applications in different scientific applications. The…

机器学习 · 计算机科学 2025-04-09 Luning Sun , Xin-Yang Liu , Siyan Zhao , Aditya Grover , Jian-Xun Wang , Jayaraman J. Thiagarajan

Surrogate models are essential for efficient exploration of large-scale ensemble simulations. Implicit neural representations (INRs) provide a compact and continuous framework for modeling spatially structured data, but they often struggle…

机器学习 · 计算机科学 2026-04-01 Ziwei Li , Yuhan Duan , Tianyu Xiong , Yi-Tang Chen , Wei-Lun Chao , Han-Wei Shen

Online relevance feedback (RF) is widely utilized in instance search (INS) tasks to further refine imperfect ranking results, but it often has low interaction efficiency. The active learning (AL) technique addresses this problem by…

计算机视觉与模式识别 · 计算机科学 2022-10-28 Yue Zhang , Chao Liang , Longxiang Jiang

In human-in-the-loop reinforcement learning or environments where calculating a reward is expensive, the costly rewards can make learning efficiency challenging to achieve. The cost of obtaining feedback from humans or calculating expensive…

机器学习 · 计算机科学 2025-03-03 Muhammed Yusuf Satici , David L. Roberts

Incremental Learning is well known machine learning approach wherein the weights of the learned model are dynamically and gradually updated to generalize on new unseen data without forgetting the existing knowledge. Incremental learning…

计算机视觉与模式识别 · 计算机科学 2018-07-25 Pratyush Kumar , Muktabh Mayank Srivastava

Stable partitioned techniques for simulating unsteady fluid-structure interaction (FSI) are known to be computationally expensive when high added-mass is involved. Multiple coupling strategies have been developed to accelerate these…

计算工程、金融与科学 · 计算机科学 2025-02-18 Azzeddine Tiba , Thibault Dairay , Florian de Vuyst , Iraj Mortazavi , Juan-Pedro Berro Ramirez

In this paper, we propose a recurrent neural network (RNN) with residual attention (RRA) to learn long-range dependencies from sequential data. We propose to add residual connections across timesteps to RNN, which explicitly enhances the…

机器学习 · 计算机科学 2017-09-19 Cheng Wang

The folding of RNA and DNA strands plays crucial roles in biological systems and bionanotechnology. However, studying these processes with high-resolution numerical models is beyond current computational capabilities due to the timescales…

软凝聚态物质 · 物理学 2024-02-07 F. Tosti Guerra , E. Poppleton , P. Šulc , L. Rovigatti

Resistive random-access memory (RRAM) is widely recognized as a promising emerging hardware platform for deep neural networks (DNNs). Yet, due to manufacturing limitations, current RRAM devices are highly susceptible to hardware defects,…

新兴技术 · 计算机科学 2024-04-25 Mingyuan Xiang , Xuhan Xie , Pedro Savarese , Xin Yuan , Michael Maire , Yanjing Li

In the fields of computation and neuroscience, much is still unknown about the underlying computations that enable key cognitive functions including learning, memory, abstraction and behavior. This paper proposes a mathematical and…

人工智能 · 计算机科学 2025-01-14 Jeet Singh

This paper presents a robust adaptive learning Model Predictive Control (MPC) framework for linear systems with parametric uncertainties and additive disturbances performing iterative tasks. The approach refines the parameter estimates…

系统与控制 · 电气工程与系统科学 2025-09-04 Hannes Petrenz , Johannes Köhler , Francesco Borrelli

Extracting associations that recur across multiple studies while controlling the false discovery rate is a fundamental challenge. Here, we consider an extension of Efron's single-study two-groups model to allow joint analysis of multiple…

统计方法学 · 统计学 2019-01-14 David Amar , Ron Shamir , Daniel Yekutieli

Active search is a learning paradigm where we seek to identify as many members of a rare, valuable class as possible given a labeling budget. Previous work on active search has assumed access to a faithful (and expensive) oracle reporting…

机器学习 · 计算机科学 2021-07-08 Quan Nguyen , Arghavan Modiri , Roman Garnett

We propose a method for confidence estimation in retrieval-augmented generation (RAG) systems that aligns closely with the correctness of large language model (LLM) outputs. Confidence estimation is especially critical in high-stakes…

计算与语言 · 计算机科学 2025-10-17 Zhiqi Huang , Vivek Datla , Chenyang Zhu , Alfy Samuel , Daben Liu , Anoop Kumar , Ritesh Soni

Non-exemplar class-incremental learning refers to classifying new and old classes without storing samples of old classes. Since only new class samples are available for optimization, it often occurs catastrophic forgetting of old knowledge.…

计算机视觉与模式识别 · 计算机科学 2023-08-28 Ke Song , Quan Xia , Guoqiang Liang , Zhaojie Chen , Yanning Zhang