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We model analytically the dynamics of a cytoskeletal filament in a motility assay. The filament is described as rigid rod free to slide in two dimensions. The motor proteins consist of polymeric tails tethered to the plane and modeled as…

统计力学 · 物理学 2015-03-19 Shiladitya Banerjee , M. Cristina Marchetti , Kristian Müller-Nedebock

The study is devoted to geometrically non-linear modelling of viscoplastic structures with residual stresses. We advocate and develop a special approach to residual stresses based on the transition between reference configurations. The…

材料科学 · 物理学 2021-04-06 I. I. Tagiltsev , A. V. Shutov

Computational simulations have the potential to assist in liver resection surgeries by facilitating surgical planning, optimizing resection strategies, and predicting postoperative outcomes. The modeling of liver tissue across multiple…

计算工程、金融与科学 · 计算机科学 2023-06-14 Adnan Ebrahem , Etienne Jessen , Marco F. P. ten Eikelder , Tarun Gangwar , Michał Mika , Dominik Schillinger

Building on the results of our computer simulation (ArXiv cond-mat/0503573)we develop a theoretical description of the motion of a bead, embedded in a network of semiflexible polymers, and responding to an applied force. The theory reveals…

软凝聚态物质 · 物理学 2013-05-29 N. Ter-Oganessian , D. A. Pink , A. Boulbitch

Starting from the working hypothesis that both physics and the corresponding mathematics have to be described by means of discrete concepts on the Planck scale, one of the many problems one has to face in this enterprise is to find the…

高能物理 - 理论 · 物理学 2008-11-26 Manfred Requardt

Mathematical models of biological populations commonly use discrete structure classes to capture trait variation among individuals (e.g. age, size, phenotype, intracellular state). Upscaling these discrete models into continuum descriptions…

种群与进化 · 定量生物学 2026-03-18 Eleonora Agostinelli , Keith L. Chambers , Helen M. Byrne , Mohit P. Dalwadi

It is increasingly being realized that liquid-crystalline features can play an important role in the properties and dynamics of cell monolayers. Here, we present a cell-based model of cell layers, based on the phase-field formulation, that…

软凝聚态物质 · 物理学 2022-04-28 Aleksandra Ardaševa , Romain Mueller , Amin Doostmohammadi

A discrete-to-continuum transformation to model 2-D discrete lattices as energetically equivalent 1-D continuum beams is developed. The study is initiated in a classical setting but results in a non-classical two-scale micropolar beam model…

应用物理 · 物理学 2020-10-20 Anssi T. Karttunen , J. N. Reddy

The influence on macroscopic work hardening of small, spherical, elastic particles dispersed within a matrix is studied using an isotropic strain gradient plasticity framework. An analytical solution, based on a recently developed yield…

材料科学 · 物理学 2021-10-25 Philip Croné , Peter Gudmundson , Jonas Faleskog

Although the behavior of entangled polymers in startup shear flows with constant shear rates has been thoroughly investigated, the response under creep has not been frequently considered. In this study, primitive chain network simulations,…

软凝聚态物质 · 物理学 2026-02-03 Yuichi Masubuchi , Giovanni Ianniruberto , Giuseppe Marrucci

We construct a homogeneous, nonlinear elastic constitutive law, that models aspects of the mechanical behavior of inhomogeneous fibrin networks. Fibers in such networks buckle when in compression. We model this as a loss of stiffness in…

生物物理 · 物理学 2015-12-18 Phoebus Rosakis , Jacob Notbohm , Guruswami Ravichandran

The development of traction-force microscopy, in the past two decades, has created the unprecedented opportunity of performing direct mechanical measurements on living cells as they adhere or crawl on uniform or micro-patterned substrates.…

生物物理 · 物理学 2019-10-25 Luca Giomi

Bundles of filamentous polymers are primary structural components of a broad range of cytoskeletal structures, and their mechanical properties play key roles in cellular functions ranging from locomotion to mechanotransduction and…

软凝聚态物质 · 物理学 2010-02-23 Claus Heussinger , Felix Schueller , Erwin Frey

Due to their unique structural and mechanical properties, randomly-crosslinked polymer networks play an important role in many different fields, ranging from cellular biology to industrial processes. In order to elucidate how these…

The elasticity of disordered and polydisperse polymer networks is a fundamental problem of soft matter physics that is still open. Here, we self-assemble polymer networks via simulations of a mixture of bivalent and tri- or tetravalent…

We report the first measurements of the intrinsic strain fluctuations of living cells using a recently-developed tracer correlation technique along with a theoretical framework for interpreting such data in heterogeneous media with…

软凝聚态物质 · 物理学 2009-11-10 A. W. C. Lau , B. D. Hoffman , A. Davies , J. C. Crocker , T. C. Lubensky

The mechanical properties of a polymeric network containing both crosslinks and sliplinks (entanglements) are studied using a multi-chain Brownian dynamics simulation. We coarse-grain at the level of chain segments connecting consecutive…

软凝聚态物质 · 物理学 2007-05-23 Julian Oberdisse , Giovanni Ianniruberto , Francesco Greco , Guiseppe Marrucci

Cytoskeletal networks, which are essentially motor-filament assemblies, play a major role in many developmental processes involving structural remodeling and shape changes. These are achieved by nonequilibrium self-organization processes…

软凝聚态物质 · 物理学 2014-12-22 Shenshen Wang , Peter G. Wolynes

We investigate the properties of membranes under tension by Monte-Carlo simulations of a generic coarse-grained model for lipid bilayers. We give a comprising overview of the behavior of several membrane characteristics, such as the area…

生物物理 · 物理学 2010-03-17 Jörg Neder , Beate West , Peter Nielaba , Friederike Schmid

We present a novel buckling instability relevant to membrane budding in eukaryotic cells. In this mechanism, curved filaments bind to a lipid bilayer without changing its intrinsic curvature. As more and more filaments adsorb, newly added…

生物物理 · 物理学 2009-07-16 Martin Lenz , Daniel J. G. Crow , Jean-François Joanny
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