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Deep learning has transformed the way large and complex image datasets can be processed, reshaping what is possible in bioimage analysis. As the complexity and size of bioimage data continues to grow, this new analysis paradigm is becoming…

定量方法 · 定量生物学 2021-08-03 Adrien Hallou , Hannah Yevick , Bianca Dumitrascu , Virginie Uhlmann

Histopathology refers to the examination by a pathologist of biopsy samples. Histopathology images are captured by a microscope to locate, examine, and classify many diseases, such as different cancer types. They provide a detailed view of…

图像与视频处理 · 电气工程与系统科学 2020-11-12 Naira Elazab , Hassan Soliman , Shaker El-Sappagh , S. M. Riazul Islam , Mohammed Elmogy

Learned image compression sits at the intersection of machine learning and image processing. With advances in deep learning, neural network-based compression methods have emerged. In this process, an encoder maps the image to a…

计算机视觉与模式识别 · 计算机科学 2025-09-15 Fabien Allemand , Attilio Fiandrotti , Sumanta Chaudhuri , Alaa Eddine Mazouz

Representation learning has driven major advances in natural image analysis by enabling models to acquire high-level semantic features. In microscopy imaging, however, it remains unclear what current representation learning methods actually…

计算机视觉与模式识别 · 计算机科学 2026-03-17 Ivan Svatko , Maxime Sanchez , Ihab Bendidi , Gilles Cottrell , Auguste Genovesio

As interpretability has been pointed out as the obstacle to the adoption of Deep Neural Networks (DNNs), there is an increasing interest in solving a transparency issue to guarantee the impressive performance. In this paper, we demonstrate…

图像与视频处理 · 电气工程与系统科学 2021-07-20 Woo-Jeoung Nam , Seong-Whan Lee

Microscopy image analysis is fundamental for different applications, from diagnosis to synthetic engineering and environmental monitoring. Modern acquisition systems have granted the possibility to acquire an escalating amount of images,…

计算机视觉与模式识别 · 计算机科学 2025-06-26 Jacopo Dapueto , Vito Paolo Pastore , Nicoletta Noceti , Francesca Odone

Content-based medical image retrieval is an important diagnostic tool that improves the explainability of computer-aided diagnosis systems and provides decision making support to healthcare professionals. Medical imaging data, such as…

计算机视觉与模式识别 · 计算机科学 2022-11-23 Yunyan Xing , Benjamin J. Meyer , Mehrtash Harandi , Tom Drummond , Zongyuan Ge

Deep learning has received extensive research interest in developing new medical image processing algorithms, and deep learning based models have been remarkably successful in a variety of medical imaging tasks to support disease detection…

计算机视觉与模式识别 · 计算机科学 2022-04-12 Xuxin Chen , Ximin Wang , Ke Zhang , Kar-Ming Fung , Theresa C. Thai , Kathleen Moore , Robert S. Mannel , Hong Liu , Bin Zheng , Yuchen Qiu

Protein function is inherently linked to its localization within the cell, and fluorescent microscopy data is an indispensable resource for learning representations of proteins. Despite major developments in molecular representation…

定量方法 · 定量生物学 2022-05-25 Anastasia Razdaibiedina , Alexander Brechalov

Deep learning methods have recently made notable advances in the tasks of classification and representation learning. These tasks are important for brain imaging and neuroscience discovery, making the methods attractive for porting to a…

神经与进化计算 · 计算机科学 2014-02-20 Sergey M. Plis , Devon R. Hjelm , Ruslan Salakhutdinov , Vince D. Calhoun

Deep learning has been achieving decent performance in computer vision requiring a large volume of images, however, collecting images is expensive and difficult in many scenarios. To alleviate this issue, many image augmentation algorithms…

计算机视觉与模式识别 · 计算机科学 2023-05-31 Mingle Xu , Sook Yoon , Alvaro Fuentes , Dong Sun Park

Mixup~\cite{zhang2017mixup} is a recently proposed method for training deep neural networks where additional samples are generated during training by convexly combining random pairs of images and their associated labels. While simple to…

The trade-off between throughput and image quality is an inherent challenge in microscopy. To improve throughput, compressive imaging under-samples image signals; the images are then computationally reconstructed by solving a regularized…

图像与视频处理 · 电气工程与系统科学 2023-03-07 Udith Haputhanthri , Andrew Seeber , Dushan Wadduwage

Understanding what deep learning (DL) models learn is essential for the safe deployment of artificial intelligence (AI) in clinical settings. While previous work has focused on pixel-based explainability methods, less attention has been…

Deep Learning could drastically boost the classification accuracy for Hyperspectral Imaging (HSI). Still, the training on the mostly small hyperspectral data sets is not trivial. Two key challenges are the large channel dimension of the…

计算机视觉与模式识别 · 计算机科学 2022-10-18 Leon Amadeus Varga , Martin Messmer , Nuri Benbarka , Andreas Zell

Model-driven analysis of biophysical phenomena is gaining increased attention and utility for medical imaging applications. In magnetic resonance imaging (MRI), the availability of well-established models for describing the relations…

医学物理 · 物理学 2023-10-31 Dinor Nagar , Nikita Vladimirov , Christian T. Farrar , Or Perlman

Mixup data augmentation approaches have been applied for various tasks of deep learning to improve the generalization ability of deep neural networks. Some existing approaches CutMix, SaliencyMix, etc. randomly replace a patch in one image…

计算机视觉与模式识别 · 计算机科学 2024-09-20 Huafeng Qin , Xin Jin , Hongyu Zhu , Hongchao Liao , Mounîm A. El-Yacoubi , Xinbo Gao

Reliable large-scale cell detection and segmentation is the fundamental first step to understanding biological processes in the brain. The ability to phenotype cells at scale can accelerate preclinical drug evaluation and system-level brain…

计算机视觉与模式识别 · 计算机科学 2023-01-03 Son T. Ly , Bai Lin , Hung Q. Vo , Dragan Maric , Badri Roysam , Hien V. Nguyen

This paper presents a comprehensive survey on deep learning-based image watermarking, a technique that entails the invisible embedding and extraction of watermarks within a cover image, aiming to offer a seamless blend of robustness and…

多媒体 · 计算机科学 2023-10-31 Xin Zhong , Arjon Das , Fahad Alrasheedi , Abdullah Tanvir

Medical image interpretation using deep learning has shown promise but often requires extensive expert-annotated datasets. To reduce this annotation burden, we develop an Image-Graph Contrastive Learning framework that pairs chest X-rays…

图像与视频处理 · 电气工程与系统科学 2024-05-17 Sameer Khanna , Daniel Michael , Marinka Zitnik , Pranav Rajpurkar