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Molecular Dynamics (MD) simulations are fundamental computational tools for the study of proteins and their free energy landscapes. However, sampling protein conformational changes through MD simulations is challenging due to the relatively…

生物大分子 · 定量生物学 2023-07-20 Diego E. Kleiman , Hassan Nadeem , Diwakar Shukla

Representation learning has been widely studied in the context of meta-learning, enabling rapid learning of new tasks through shared representations. Recent works such as MAML have explored using fine-tuning-based metrics, which measure the…

机器学习 · 计算机科学 2021-05-06 Kurtland Chua , Qi Lei , Jason D. Lee

The rapid evolution of molecular dynamics (MD) methods, including machine-learned dynamics, has outpaced the development of standardized tools for method validation. Objective comparison between simulation approaches is often hindered by…

Prompt tuning, a recently emerging paradigm, enables the powerful vision-language pre-training models to adapt to downstream tasks in a parameter -- and data -- efficient way, by learning the ``soft prompts'' to condition frozen…

计算机视觉与模式识别 · 计算机科学 2023-08-21 Juncheng Li , Minghe Gao , Longhui Wei , Siliang Tang , Wenqiao Zhang , Mengze Li , Wei Ji , Qi Tian , Tat-Seng Chua , Yueting Zhuang

Prompt optimization and fine-tuning are two major approaches to improve the performance of Large Language Models (LLMs). They enhance the capabilities of LLMs from complementary perspectives: the former through explicit natural language,…

计算与语言 · 计算机科学 2026-03-03 Xiaohe Bo , Rui Li , Zexu Sun , Quanyu Dai , Zeyu Zhang , Zihang Tian , Xu Chen , Zhenhua Dong

When adapting large language models (LLMs) to a specific downstream task, two primary approaches are commonly employed: (1) prompt engineering, often with in-context few-shot learning, leveraging the model's inherent generalization…

机器学习 · 计算机科学 2025-12-24 Jorg Bornschein , Clare Lyle , Yazhe Li , Amal Rannen-Triki , Xu Owen He , Razvan Pascanu

Prompt tuning (PT) is an effective approach to adapting pre-trained language models to downstream tasks. Without a good initialization, prompt tuning doesn't perform well under few-shot settings. So pre-trained prompt tuning (PPT) is…

计算与语言 · 计算机科学 2022-05-26 Yukun Huang , Kun Qian , Zhou Yu

Prompting method is regarded as one of the crucial progress for few-shot nature language processing. Recent research on prompting moves from discrete tokens based ``hard prompts'' to continuous ``soft prompts'', which employ learnable…

计算与语言 · 计算机科学 2023-02-06 Yutai Hou , Hongyuan Dong , Xinghao Wang , Bohan Li , Wanxiang Che

Pre-trained vision-language models are able to interpret visual concepts and language semantics. Prompt learning, a method of constructing prompts for text encoders or image encoders, elicits the potentials of pre-trained models and readily…

计算机视觉与模式识别 · 计算机科学 2025-02-21 Zhenhan Huang , Tejaswini Pedapati , Pin-Yu Chen , Jianxi Gao

Molecular dynamics simulations hold great promise for providing insight into the microscopic behavior of complex molecular systems. However, their effectiveness is often constrained by long timescales associated with rare events. Enhanced…

计算物理 · 物理学 2026-03-03 Kai Zhu , Enrico Trizio , Jintu Zhang , Renling Hu , Linlong Jiang , Tingjun Hou , Luigi Bonati

In computer vision, fine-tuning is the de-facto approach to leverage pre-trained vision models to perform downstream tasks. However, deploying it in practice is quite challenging, due to adopting parameter inefficient global update and…

计算机视觉与模式识别 · 计算机科学 2022-08-24 Xing Nie , Bolin Ni , Jianlong Chang , Gaomeng Meng , Chunlei Huo , Zhaoxiang Zhang , Shiming Xiang , Qi Tian , Chunhong Pan

Molecular dynamics simulations are an important tool for describing the evolution of a chemical system with time. However, these simulations are inherently held back either by the prohibitive cost of accurate electronic structure theory…

化学物理 · 物理学 2018-12-20 Michael Gastegger , Philipp Marquetand

We review a selection of methods for performing enhanced sampling in molecular dynamics simulations. We consider methods based on collective variable biasing and on tempering, and offer both historical and contemporary perspectives. In…

统计力学 · 物理学 2014-01-03 Cameron Abrams , Giovanni Bussi

The large language models have achieved superior performance on various natural language tasks. One major drawback of such approaches is they are resource-intensive in fine-tuning new datasets. Soft-prompt tuning presents a…

计算与语言 · 计算机科学 2023-10-30 Guoxin Chen , Yiming Qian , Bowen Wang , Liangzhi Li

As powerful pre-trained vision-language models (VLMs) like CLIP gain prominence, numerous studies have attempted to combine VLMs for downstream tasks. Among these, prompt learning has been validated as an effective method for adapting to…

计算机视觉与模式识别 · 计算机科学 2024-09-19 Yu Du , Tong Niu , Rong Zhao

Pre-trained models have been shown effective in many code intelligence tasks. These models are pre-trained on large-scale unlabeled corpus and then fine-tuned in downstream tasks. However, as the inputs to pre-training and downstream tasks…

软件工程 · 计算机科学 2022-07-26 Chaozheng Wang , Yuanhang Yang , Cuiyun Gao , Yun Peng , Hongyu Zhang , Michael R. Lyu

Prompts for pre-trained language models (PLMs) have shown remarkable performance by bridging the gap between pre-training tasks and various downstream tasks. Among these methods, prompt tuning, which freezes PLMs and only tunes soft…

计算与语言 · 计算机科学 2022-03-15 Yuxian Gu , Xu Han , Zhiyuan Liu , Minlie Huang

Simulations of biological macromolecules play an important role in understanding the physical basis of a number of complex processes such as protein folding. Even with increasing computational power and evolution of specialized…

分布式、并行与集群计算 · 计算机科学 2019-09-18 Hyungro Lee , Heng Ma , Matteo Turilli , Debsindhu Bhowmik , Shantenu Jha , Arvind Ramanathan

Molecular dynamics (MD) has become a powerful tool for studying biophysical systems, due to increasing computational power and availability of software. Although MD has made many contributions to better understanding these complex…

计算物理 · 物理学 2019-09-27 Yihang Wang , Joao Marcelo Lamim Ribeiro , Pratyush Tiwary

Machine learned interaction potentials (MLIPs) have become a critical component of large-scale, high-quality simulations for a range of chemical and biochemical systems. Yet, despite their in-distribution accuracy, molecular dynamics…

化学物理 · 物理学 2026-04-09 Eric C. -Y. Yuan , Teresa Head-Gordon
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