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Biomedical Named Entity Recognition (NER) is a challenging problem in biomedical information processing due to the widespread ambiguity of out of context terms and extensive lexical variations. Performance on bioNER benchmarks continues to…

计算与语言 · 计算机科学 2019-08-19 Shreyas Sharma , Ron Daniel

Large language models (LLMs) are typically trained on general source data for various domains, but a recent surge in domain-specific LLMs has shown their potential to outperform general-purpose models in domain-specific tasks (e.g.,…

计算与语言 · 计算机科学 2024-08-09 Vithursan Thangarasa , Mahmoud Salem , Shreyas Saxena , Kevin Leong , Joel Hestness , Sean Lie

Natural Language Processing (NLP) has been revolutionized by the use of Pre-trained Language Models (PLMs) such as BERT. Despite setting new records in nearly every NLP task, PLMs still face a number of challenges including poor…

计算与语言 · 计算机科学 2022-12-29 Chaoqi Zhen , Yanlei Shang , Xiangyu Liu , Yifei Li , Yong Chen , Dell Zhang

The emergence of Pre-trained Language Models (PLMs) has achieved tremendous success in the field of Natural Language Processing (NLP) by learning universal representations on large corpora in a self-supervised manner. The pre-trained models…

信息检索 · 计算机科学 2023-09-14 Peng Liu , Lemei Zhang , Jon Atle Gulla

Most biomedical pretrained language models are monolingual and cannot handle the growing cross-lingual requirements. The scarcity of non-English domain corpora, not to mention parallel data, poses a significant hurdle in training…

计算与语言 · 计算机科学 2023-11-21 Lei Geng , Xu Yan , Ziqiang Cao , Juntao Li , Wenjie Li , Sujian Li , Xinjie Zhou , Yang Yang , Jun Zhang

Word vectors and Language Models (LMs) pretrained on a large amount of unlabelled data can dramatically improve various Natural Language Processing (NLP) tasks. However, the measure and impact of similarity between pretraining data and…

计算与语言 · 计算机科学 2019-05-20 Xiang Dai , Sarvnaz Karimi , Ben Hachey , Cecile Paris

Exploring the application of powerful large language models (LLMs) on the named entity recognition (NER) task has drawn much attention recently. This work pushes the performance boundary of zero-shot NER with LLMs by proposing a…

计算与语言 · 计算机科学 2024-03-22 Tingyu Xie , Qi Li , Yan Zhang , Zuozhu Liu , Hongwei Wang

Neural network potentials (NNPs) are crucial for accelerating computational materials science by surrogating density functional theory (DFT) calculations. Improving their accuracy is possible through pre-training and fine-tuning, where an…

机器学习 · 计算机科学 2025-05-29 Yosuke Oyama , Yusuke Majima , Eiji Ohta , Yasufumi Sakai

Recent advancements in vision-language models (VLMs), such as CLIP, have demonstrated substantial success in self-supervised representation learning for vision tasks. However, effectively adapting VLMs to downstream applications remains…

计算机视觉与模式识别 · 计算机科学 2025-03-13 Taha Koleilat , Hojat Asgariandehkordi , Hassan Rivaz , Yiming Xiao

Few-shot learning has been studied to adapt models to tasks with very few samples. It holds profound significance, particularly in clinical tasks, due to the high annotation cost of medical images. Several works have explored few-shot…

计算机视觉与模式识别 · 计算机科学 2024-02-06 Kaipeng Zheng , Weiran Huang , Lichao Sun

Recently, the development of pre-trained language models has brought natural language processing (NLP) tasks to the new state-of-the-art. In this paper we explore the efficiency of various pre-trained language models. We pre-train a list of…

计算与语言 · 计算机科学 2023-07-27 Tong Guo

Pre-training large language models on genomic sequences is a powerful approach for learning biologically meaningful representations. Masked language modeling (MLM) methods, such as DNABERT and Nucleotide Transformer (NT), achieve strong…

基因组学 · 定量生物学 2025-08-20 Ke Ding , Brian Parker , Jiayu Wen

Large, pre-trained transformer-based language models such as BERT have drastically changed the Natural Language Processing (NLP) field. We present a survey of recent work that uses these large language models to solve NLP tasks via…

Time is an important aspect of documents and is used in a range of NLP and IR tasks. In this work, we investigate methods for incorporating temporal information during pre-training to further improve the performance on time-related tasks.…

计算与语言 · 计算机科学 2023-04-28 Jiexin Wang , Adam Jatowt , Masatoshi Yoshikawa , Yi Cai

Adapting language models (LMs) to novel domains is often achieved through fine-tuning a pre-trained LM (PLM) on domain-specific data. Fine-tuning introduces new knowledge into an LM, enabling it to comprehend and efficiently perform a…

计算与语言 · 计算机科学 2024-03-29 Micheal Abaho , Danushka Bollegala , Gary Leeming , Dan Joyce , Iain E Buchan

This paper investigates the problem of Named Entity Recognition (NER) for extreme low-resource languages with only a few hundred tagged data samples. NER is a fundamental task in Natural Language Processing (NLP). A critical driver…

计算与语言 · 计算机科学 2022-12-20 Shashank Sonkar , Zichao Wang , Richard G. Baraniuk

Recent advancements in Contrastive Language-Image Pre-training (CLIP) have demonstrated notable success in self-supervised representation learning across various tasks. However, the existing CLIP-like approaches often demand extensive GPU…

计算机视觉与模式识别 · 计算机科学 2024-07-31 Yuexi Du , Brian Chang , Nicha C. Dvornek

A salient characteristic of pre-trained language models (PTLMs) is a remarkable improvement in their generalization capability and emergence of new capabilities with increasing model capacity and pre-training dataset size. Consequently, we…

In this paper we introduce RE-tune, a novel approach for fine-tuning pre-trained Multimodal Biomedical Vision-Language models (VLMs) in Incremental Learning scenarios for multi-label chest disease diagnosis. RE-tune freezes the backbones…

人工智能 · 计算机科学 2024-10-24 Marco Mistretta , Andrew D. Bagdanov

Text embeddings have become an essential part of a variety of language applications. However, methods for interpreting, exploring and reversing embedding spaces are limited, reducing transparency and precluding potentially valuable…

计算与语言 · 计算机科学 2026-01-27 Brian Ondov , Chia-Hsuan Chang , Yujia Zhou , Mauro Giuffrè , Hua Xu