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The Cryo-EM 3D particle reconstruction is essential for identifying protein and uncover the biological mechanism of the macro-molecules. In this paper, we use Kam method for reconstruction. Kam method is \textit{ab-initio}, and it assumes…

定量方法 · 定量生物学 2019-06-21 Yin Xian

The principal component analysis (PCA) is widely used for data decorrelation and dimensionality reduction. However, the use of PCA may be impractical in real-time applications, or in situations were energy and computing constraints are…

图像与视频处理 · 电气工程与系统科学 2024-01-31 R. S. Oliveira , R. J. Cintra , F. M. Bayer , T. L. T. da Silveira , A. Madanayake , A. Leite

High dimensional data and systems with many degrees of freedom are often characterized by covariance matrices. In this paper, we consider the problem of simultaneously estimating the dimension of the principal (dominant) subspace of these…

数值分析 · 计算机科学 2018-10-10 Shashanka Ubaru , Abd-Krim Seghouane , Yousef Saad

STEM XEDS spectrum images can be drastically denoised by application of the principal component analysis (PCA). This paper looks inside the PCA workflow step by step on an example of a complex semiconductor structure consisting of a number…

图像与视频处理 · 电气工程与系统科学 2019-10-16 Pavel Potapov , Axel Lubk

Computer-Aided Design (CAD) plays a pivotal role in industrial manufacturing, yet 2D Parametric Primitive Analysis (PPA) remains underexplored due to two key challenges: structural constraint reasoning and advanced semantic understanding.…

计算机视觉与模式识别 · 计算机科学 2025-06-03 Ke Niu , Yuwen Chen , Haiyang Yu , Zhuofan Chen , Xianghui Que , Bin Li , Xiangyang Xue

The CP decomposition for high dimensional non-orthogonal spiked tensors is an important problem with broad applications across many disciplines. However, previous works with theoretical guarantee typically assume restrictive incoherence…

机器学习 · 统计学 2022-09-20 Yuefeng Han , Cun-Hui Zhang

Dimensionality reduction is a crucial step for pattern recognition and data mining tasks to overcome the curse of dimensionality. Principal component analysis (PCA) is a traditional technique for unsupervised dimensionality reduction, which…

机器学习 · 计算机科学 2017-05-04 Zan Gao , Guotai Zhang , Feiping Nie , Hua Zhang

Many engineering processes can be accurately modelled using partial differential equations (PDEs), but high dimensionality and non-convexity of the resulting systems pose limitations on their efficient optimisation. In this work, a model…

最优化与控制 · 数学 2024-10-17 Min Tao , Panagiotis Petsagkourakis , Jie Li , Constantinos Theodoropoulos

Cryo-EM data processing typically focuses on the structure of the main conformational state under investigation and discards images that belong to other states. This approach can reach atomic resolution, but ignores vast amounts of valuable…

生物大分子 · 定量生物学 2024-02-20 Felix Lambrecht , Andreas Kröpelin , Mario Lüttich , Michael Habeck , David Haselbach , Holger Stark

Principal Component Analysis is a novel way of of dimensionality reduction. This problem essentially boils down to finding the top k eigen vectors of the data covariance matrix. A considerable amount of literature is found on algorithms…

机器学习 · 计算机科学 2019-01-08 Jian Vora

Principal Component Analysis (PCA) is a widely used technique in machine learning, data analysis and signal processing. With the increase in the size and complexity of datasets, it has become important to develop low-space usage algorithms…

机器学习 · 计算机科学 2023-03-09 Yichuan Deng , Zhao Song , Zifan Wang , Han Zhang

High dimensional data has introduced challenges that are difficult to address when attempting to implement classical approaches of statistical process control. This has made it a topic of interest for research due in recent years. However,…

应用统计 · 统计学 2019-04-23 Mohammad Nabhan , Yajun Mei , Jianjun Shi

Understanding the morphology of galaxies is a critical aspect of astrophysics research, providing insight into the formation, evolution, and physical properties of these vast cosmic structures. Various observational and computational…

星系天体物理 · 物理学 2024-11-27 Ufuk Çakır , Tobias Buck

We consider principal component analysis for contaminated data-set in the high dimensional regime, where the dimensionality of each observation is comparable or even more than the number of observations. We propose a deterministic…

机器学习 · 计算机科学 2012-06-22 Jiashi Feng , Huan Xu , Shuicheng Yan

Principal component analysis (PCA), the most popular dimension-reduction technique, has been used to analyze high-dimensional data in many areas. It discovers the homogeneity within the data and creates a reduced feature space to capture as…

统计方法学 · 统计学 2026-03-24 Daning Bi , Le Chang , Yanrong Yang

Data compression can be achieved by reducing the dimensionality of high-dimensional but approximately low-rank datasets, which may in fact be described by the variation of a much smaller number of parameters. It often serves as a…

量子物理 · 物理学 2021-08-03 Chao-Hua Yu , Fei Gao , Song Lin , Jingbo Wang

Principal Component Analysis (PCA) is a workhorse of modern data science. While PCA assumes the data conforms to Euclidean geometry, for specific data types, such as hierarchical and cyclic data structures, other spaces are more…

机器学习 · 统计学 2024-07-11 Puoya Tabaghi , Michael Khanzadeh , Yusu Wang , Sivash Mirarab

Principal component analysis (PCA) is a classical dimension reduction method which projects data onto the principal subspace spanned by the leading eigenvectors of the covariance matrix. However, it behaves poorly when the number of…

统计理论 · 数学 2013-05-27 Zongming Ma

We present a new technique called contrastive principal component analysis (cPCA) that is designed to discover low-dimensional structure that is unique to a dataset, or enriched in one dataset relative to other data. The technique is a…

机器学习 · 统计学 2017-11-23 Abubakar Abid , Martin J. Zhang , Vivek K. Bagaria , James Zou

Locally Linear Embedding (LLE) is a nonlinear spectral dimensionality reduction and manifold learning method. It has two main steps which are linear reconstruction and linear embedding of points in the input space and embedding space,…

机器学习 · 统计学 2022-09-13 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley