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Molecular representation is a critical element in our understanding of the physical world and the foundation for modern molecular machine learning. Previous molecular machine learning models have employed strings, fingerprints, global…

Representation learning is central to graph machine learning, powering tasks such as link prediction and node classification. However, most graph embeddings are hard to interpret, offering limited insight into how learned features relate to…

Scaffold based drug discovery (SBDD) is a technique for drug discovery which pins chemical scaffolds as the framework of design. Scaffolds, or molecular frameworks, organize the design of compounds into local neighborhoods. We formalize…

定量方法 · 定量生物学 2021-09-13 Austin Clyde , Ashka Shah , Max Zvyagin , Arvind Ramanathan , Rick Stevens

Neural embedding approaches have become a staple in the fields of computer vision, natural language processing, and more recently, graph analytics. Given the pervasive nature of these algorithms, the natural question becomes how to exploit…

计算与语言 · 计算机科学 2020-10-27 Alexander Kalinowski , Yuan An

Graph Convolution Network (GCN) has been widely applied in recommender systems for its representation learning capability on user and item embeddings. However, GCN is vulnerable to noisy and incomplete graphs, which are common in real…

信息检索 · 计算机科学 2023-05-16 Yaxing Fang , Pengpeng Zhao , Guanfeng Liu , Yanchi Liu , Victor S. Sheng , Lei Zhao , Xiaofang Zhou

Many datasets take the form of a bipartite graph where two types of nodes are connected by relationships, like the movies watched by a user or the tags associated with a file. The partitioning of the bipartite graph could be used to fasten…

信息检索 · 计算机科学 2021-10-01 Gaëlle Candel , David Naccache

Both knowledge graphs and user-item interaction graphs are frequently used in recommender systems due to their ability to provide rich information for modeling users and items. However, existing studies often focused on one of these sources…

信息检索 · 计算机科学 2023-06-27 Yajing Yang , Zeyu Zeng , Mao Chen , Ruirui Shang

Bipartite graph embedding has recently attracted much attention due to the fact that bipartite graphs are widely used in various application domains. Most previous methods, which adopt random walk-based or reconstruction-based objectives,…

社会与信息网络 · 计算机科学 2020-12-11 Jiangxia Cao , Xixun Lin , Shu Guo , Luchen Liu , Tingwen Liu , Bin Wang

Assembly-based tools provide a powerful modeling paradigm for non-expert shape designers. However, choosing a component from a large shape repository and aligning it to a partial assembly can become a daunting task. In this paper we…

图形学 · 计算机科学 2018-07-05 Minhyuk Sung , Hao Su , Vladimir G. Kim , Siddhartha Chaudhuri , Leonidas Guibas

We describe a first open-access database of experimentally investigated hybrid organic-inorganic materials with two-dimensional (2D) perovskite-like crystal structure. The database includes 515 compounds, containing 180 different organic…

Predicting a user's preference in a short anonymous interaction session instead of long-term history is a challenging problem in the real-life session-based recommendation, e.g., e-commerce and media stream. Recent research of the…

信息检索 · 计算机科学 2021-07-12 Ruihong Qiu , Jingjing Li , Zi Huang , Hongzhi Yin

Computational approaches to exploring "chemical universes", i.e., very large sets, potentially infinite sets of compounds that can be constructed by a prescribed collection of reaction mechanisms, in practice suffer from a combinatorial…

形式语言与自动机理论 · 计算机科学 2014-04-16 Jakob L. Andersen , Christoph Flamm , Daniel Merkle , Peter F. Stadler

Multi-robot systems of increasing size and complexity are used to solve large-scale problems, such as area exploration and search and rescue. A key decision in human-robot teaming is dividing a multi-robot system into teams to address…

机器人学 · 计算机科学 2020-04-09 Brian Reily , Christopher Reardon , Hao Zhang

This project develops an online, inductive recommendation system for newly listed products on e-commerce platforms, focusing on suggesting relevant new items to customers as they purchase other products. Using the Amazon Product…

社会与信息网络 · 计算机科学 2025-06-04 Minghao Liu , Catherine Zhao , Nathan Zhou

Machine learning has emerged as a powerful approach in materials discovery. Its major challenge is selecting features that create interpretable representations of materials, useful across multiple prediction tasks. We introduce an…

Recommender systems rely on Collaborative Filtering (CF) to predict user preferences by leveraging patterns in historical user-item interactions. While traditional CF methods primarily focus on learning compact vector embeddings for users…

信息检索 · 计算机科学 2025-01-29 Darnbi Sakong , Thanh Trung Huynh , Jun Jo

The recent proliferation of publicly available graph-structured data has sparked an interest in machine learning algorithms for graph data. Since most traditional machine learning algorithms assume data to be tabular, embedding algorithms…

机器学习 · 计算机科学 2019-08-09 Sourav Mukherjee , Tim Oates , Ryan Wright

Graph-based recommender systems (GRSs) analyze the structural information in the graphical representation of data to make better recommendations, especially when the direct user-item relation data is sparse. Ranking-oriented GRSs that form…

信息检索 · 计算机科学 2020-08-03 Taher Hekmatfar , Saman Haratizadeh , Sama Goliaei

Density based representations of atomic environments that are invariant under Euclidean symmetries have become a widely used tool in the machine learning of interatomic potentials, broader data-driven atomistic modelling and the…

Conversational recommender system (CRS), which combines the techniques of dialogue system and recommender system, has obtained increasing interest recently. In contrast to traditional recommender system, it learns the user preference better…

信息检索 · 计算机科学 2024-08-05 Yunwen Xia , Hui Fang , Jie Zhang , Chong Long