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In recent years, large language models (LLMs) have emerged as promising candidates for graph tasks. Many studies leverage natural language to describe graphs and apply LLMs for reasoning, yet most focus narrowly on performance benchmarks…

机器学习 · 计算机科学 2026-01-28 Yuxiang Wang , Xinnan Dai , Wenqi Fan , Yao Ma

While great success has been achieved in building vision models with Contrastive Language-Image Pre-training (CLIP) over internet-scale image-text pairs, building transferable Graph Neural Networks (GNNs) with CLIP pipeline is challenging…

机器学习 · 计算机科学 2025-06-03 Zihao Li , Lecheng Zheng , Bowen Jin , Dongqi Fu , Baoyu Jing , Yikun Ban , Jingrui He , Jiawei Han

There is increasing adoption of artificial intelligence in drug discovery. However, existing studies use machine learning to mainly utilize the chemical structures of molecules but ignore the vast textual knowledge available in chemistry.…

机器学习 · 计算机科学 2024-01-31 Shengchao Liu , Weili Nie , Chengpeng Wang , Jiarui Lu , Zhuoran Qiao , Ling Liu , Jian Tang , Chaowei Xiao , Anima Anandkumar

Large Language Models (LLMs) have achieved impressive performance in text understanding and have become an essential tool for building smart assistants. Originally focusing on text, they have been enhanced with multimodal capabilities in…

软件工程 · 计算机科学 2024-10-24 Aaron Haag , Vlad Argatu , Oliver Lohse

This work improves the quality of automated machine learning (AutoML) systems by using dataset and function descriptions while significantly decreasing computation time from minutes to milliseconds by using a zero-shot approach. Given a new…

机器学习 · 计算机科学 2021-06-28 Nikhil Singh , Brandon Kates , Jeff Mentch , Anant Kharkar , Madeleine Udell , Iddo Drori

In biological tasks, data is rarely plentiful as it is generated from hard-to-gather measurements. Therefore, pre-training foundation models on large quantities of available data and then transfer to low-data downstream tasks is a promising…

The quest for accurate prediction of drug molecule properties poses a fundamental challenge in the realm of Artificial Intelligence Drug Discovery (AIDD). An effective representation of drug molecules emerges as a pivotal component in this…

机器学习 · 计算机科学 2024-04-22 Zhuoyuan Wang , Jiacong Mi , Shan Lu , Jieyue He

While recent advancements in multimodal language models have enabled image generation from expressive multi-image instructions, existing methods struggle to maintain performance under complex interleaved instructions. This limitation stems…

计算机视觉与模式识别 · 计算机科学 2026-05-13 Yabo Zhang , Kunchang Li , Dewei Zhou , Xinyu Huang , Xun Wang

Recent work has shown that language models (LMs) trained with multi-task \textit{instructional learning} (MTIL) can solve diverse NLP tasks in zero- and few-shot settings with improved performance compared to prompt tuning. MTIL illustrates…

计算与语言 · 计算机科学 2022-10-24 Budhaditya Deb , Guoqing Zheng , Ahmed Hassan Awadallah

Graphs are pervasive in the real-world, such as social network analysis, bioinformatics, and knowledge graphs. Graph neural networks (GNNs) have great ability in node classification, a fundamental task on graphs. Unfortunately, conventional…

机器学习 · 计算机科学 2024-09-05 Quan Li , Tianxiang Zhao , Lingwei Chen , Junjie Xu , Suhang Wang

Neural text classification models typically treat output labels as categorical variables which lack description and semantics. This forces their parametrization to be dependent on the label set size, and, hence, they are unable to scale to…

计算与语言 · 计算机科学 2019-01-31 Nikolaos Pappas , James Henderson

Leveraging Graph Neural Networks (GNNs) as graph encoders and aligning the resulting representations with Large Language Models (LLMs) through alignment instruction tuning has become a mainstream paradigm for constructing Graph Language…

机器学习 · 计算机科学 2026-05-13 Haibo Chen , Xin Wang , Jiaheng Chao , Ling Feng , Wenwu Zhu

Graph neural networks are currently leading the performance charts in learning-based molecule property prediction and classification. Computational chemistry has, therefore, become the a prominent testbed for generic graph neural networks,…

机器学习 · 计算机科学 2020-02-04 Eliya Nachmani , Lior Wolf

Using Large Language Models (LLMs) to process graph-structured data is an active research area, yet current state-of-the-art approaches typically rely on multi-step pipelines with Graph Neural Network (GNN) encoders that compress rich…

机器学习 · 计算机科学 2026-05-12 Dario Vajda

Data-to-text generation has recently attracted substantial interests due to its wide applications. Existing methods have shown impressive performance on an array of tasks. However, they rely on a significant amount of labeled data for each…

计算与语言 · 计算机科学 2020-10-13 Wenhu Chen , Yu Su , Xifeng Yan , William Yang Wang

We seek to automate the design of molecules based on specific chemical properties. Our primary contributions are a simpler method for generating SMILES strings guaranteed to be chemically valid, using a combination of a new context-free…

机器学习 · 计算机科学 2018-11-29 Egor Kraev

Molecular property is usually observed with a limited number of samples, and researchers have considered property prediction as a few-shot problem. One important fact that has been ignored by prior works is that each molecule can be…

机器学习 · 计算机科学 2023-06-30 Xiang Zhuang , Qiang Zhang , Bin Wu , Keyan Ding , Yin Fang , Huajun Chen

Curriculum learning provides a systematic approach to training. It refines training progressively, tailors training to task requirements, and improves generalization through exposure to diverse examples. We present a curriculum learning…

计算与语言 · 计算机科学 2023-11-23 Nidhi Vakil , Hadi Amiri

Molecular sciences address a wide range of problems involving molecules of different types and sizes and their complexes. Recently, geometric deep learning, especially Graph Neural Networks, has shown promising performance in molecular…

机器学习 · 计算机科学 2023-11-21 Shuo Zhang , Yang Liu , Lei Xie

Large Language Models (LLMs), with their remarkable task-handling capabilities and innovative outputs, have catalyzed significant advancements across a spectrum of fields. However, their proficiency within specialized domains such as…

定量方法 · 定量生物学 2024-03-05 Yin Fang , Xiaozhuan Liang , Ningyu Zhang , Kangwei Liu , Rui Huang , Zhuo Chen , Xiaohui Fan , Huajun Chen