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Medical progress notes play a crucial role in documenting a patient's hospital journey, including his or her condition, treatment plan, and any updates for healthcare providers. Automatic summarisation of a patient's problems in the form of…

This paper presents the results of the shared task on Lay Summarisation of Biomedical Research Articles (BioLaySumm), hosted at the BioNLP Workshop at ACL 2023. The goal of this shared task is to develop abstractive summarisation models…

计算与语言 · 计算机科学 2023-10-26 Tomas Goldsack , Zheheng Luo , Qianqian Xie , Carolina Scarton , Matthew Shardlow , Sophia Ananiadou , Chenghua Lin

In this paper, we consider the challenge of summarizing patients' medical progress notes in a limited data setting. For the Problem List Summarization (shared task 1A) at the BioNLP Workshop 2023, we demonstrate that Clinical-T5 fine-tuned…

计算与语言 · 计算机科学 2023-06-09 Potsawee Manakul , Yassir Fathullah , Adian Liusie , Vyas Raina , Vatsal Raina , Mark Gales

This paper presents the setup and results of the second edition of the BioLaySumm shared task on the Lay Summarisation of Biomedical Research Articles, hosted at the BioNLP Workshop at ACL 2024. In this task edition, we aim to build on the…

计算与语言 · 计算机科学 2024-08-19 Tomas Goldsack , Carolina Scarton , Matthew Shardlow , Chenghua Lin

With the increasing number of clinical trial reports generated every day, it is becoming hard to keep up with novel discoveries that inform evidence-based healthcare recommendations. To help automate this process and assist medical experts,…

计算与语言 · 计算机科学 2023-05-03 Juraj Vladika , Florian Matthes

Objective: to provide a scoping review of papers on clinical natural language processing (NLP) tasks that use publicly available electronic health record data from a cohort of patients. Materials and Methods: We searched six databases,…

We report the results of DialogSum Challenge, the shared task on summarizing real-life scenario dialogues at INLG 2022. Four teams participate in this shared task and three submit their system reports, exploring different methods to improve…

计算与语言 · 计算机科学 2022-09-07 Yulong Chen , Naihao Deng , Yang Liu , Yue Zhang

This paper presents an overview of the PromptCBLUE shared task (http://cips-chip.org.cn/2023/eval1) held in the CHIP-2023 Conference. This shared task reformualtes the CBLUE benchmark, and provide a good testbed for Chinese open-domain or…

计算与语言 · 计算机科学 2024-01-01 Wei Zhu , Xiaoling Wang , Mosha Chen , Buzhou Tang

This paper presents ClinicSum, a novel framework designed to automatically generate clinical summaries from patient-doctor conversations. It utilizes a two-module architecture: a retrieval-based filtering module that extracts Subjective,…

In this paper, we present our approach to the shared task "Discharge Me!" at the BioNLP Workshop 2024. The primary goal of this task is to reduce the time and effort clinicians spend on writing detailed notes in the electronic health record…

计算与语言 · 计算机科学 2024-06-27 Yunzhen He , Hiroaki Yamagiwa , Hidetoshi Shimodaira

Clinical documentation is an important aspect of clinicians' daily work and often demands a significant amount of time. The BioNLP 2024 Shared Task on Streamlining Discharge Documentation (Discharge Me!) aims to alleviate this documentation…

计算与语言 · 计算机科学 2024-07-04 Jinghui Liu , Aaron Nicolson , Jason Dowling , Bevan Koopman , Anthony Nguyen

In this paper, we present an overview of ClinIQLink, a shared task, collocated with the 24th BioNLP workshop at ACL 2025, designed to stress-test large language models (LLMs) on medically-oriented question answering aimed at the level of a…

计算与语言 · 计算机科学 2025-06-30 Brandon Colelough , Davis Bartels , Dina Demner-Fushman

Daily progress notes are common types in the electronic health record (EHR) where healthcare providers document the patient's daily progress and treatment plans. The EHR is designed to document all the care provided to patients, but it also…

人工智能 · 计算机科学 2023-03-15 Yanjun Gao , Dmitriy Dligach , Timothy Miller , Matthew M Churpek , Ozlem Uzuner , Majid Afshar

Efficient communication between patients and clinicians plays an important role in shared decision-making. However, clinical reports are often lengthy and filled with clinical jargon, making it difficult for domain experts to identify…

计算与语言 · 计算机科学 2025-09-10 Libo Ren , Yee Man Ng , Lifeng Han

Automatically summarizing patients' main problems from daily progress notes using natural language processing methods helps to battle against information and cognitive overload in hospital settings and potentially assists providers with…

计算与语言 · 计算机科学 2022-09-16 Yanjun Gao , Dmitriy Dligach , Timothy Miller , Dongfang Xu , Matthew M. Churpek , Majid Afshar

With an increasing number of parameters and pre-training data, generative large language models (LLMs) have shown remarkable capabilities to solve tasks with minimal or no task-related examples. Notably, LLMs have been successfully employed…

计算与语言 · 计算机科学 2023-10-31 Christoph Leiter , Juri Opitz , Daniel Deutsch , Yang Gao , Rotem Dror , Steffen Eger

The CL-SciSumm Shared Task is the first medium-scale shared task on scientific document summarization in the computational linguistics~(CL) domain. In 2019, it comprised three tasks: (1A) identifying relationships between citing documents…

计算与语言 · 计算机科学 2019-07-24 Muthu Kumar Chandrasekaran , Michihiro Yasunaga , Dragomir Radev , Dayne Freitag , Min-Yen Kan

This is an overview of the thirteenth edition of the BioASQ challenge in the context of the Conference and Labs of the Evaluation Forum (CLEF) 2025. BioASQ is a series of international challenges promoting advances in large-scale biomedical…

This paper describes PULSAR, our system submission at the ImageClef 2023 MediQA-Sum task on summarising patient-doctor dialogues into clinical records. The proposed framework relies on domain-specific pre-training, to produce a specialised…

In this paper, we introduce the Eval4NLP-2021shared task on explainable quality estimation. Given a source-translation pair, this shared task requires not only to provide a sentence-level score indicating the overall quality of the…

计算与语言 · 计算机科学 2021-10-12 Marina Fomicheva , Piyawat Lertvittayakumjorn , Wei Zhao , Steffen Eger , Yang Gao
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