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Substring kernels are classical tools for representing biological sequences or text. However, when large amounts of annotated data are available, models that allow end-to-end training such as neural networks are often preferred. Links…

机器学习 · 统计学 2019-10-18 Dexiong Chen , Laurent Jacob , Julien Mairal

Dynamic positron emission tomography (PET) images can reveal the distribution of tracers in the organism and the dynamic processes involved in biochemical reactions, and it is widely used in clinical practice. Despite the high effectiveness…

图像与视频处理 · 电气工程与系统科学 2025-12-22 Jie Sun , Junyan Zhang , Qian Xia , Chuanfu Sun , Yumei Chen , Yunjie Yang , Huafeng Liu , Wentao Zhu , Qiegen Liu

The Jiangmen Underground Neutrino Observatory (JUNO) is designed to determine the neutrino mass ordering and measure neutrino oscillation parameters. A precise muon reconstruction is crucial to reduce one of the major backgrounds induced by…

仪器与探测器 · 物理学 2021-05-11 Yan Liu , Weidong Li , Tao Lin , Wenxing Fang , Simon C. Blyth , Jilei Xu , Miao He , Kun Zhang

Dense retrieval is a basic building block of information retrieval applications. One of the main challenges of dense retrieval in real-world settings is the handling of queries containing misspelled words. A popular approach for handling…

Reinforcement learning with neural networks (RLNN) has recently demonstrated great promise for many problems, including some problems in quantum information theory. In this work, we apply RLNN to quantum hypothesis testing and determine the…

量子物理 · 物理学 2022-01-26 Sarah Brandsen , Kevin D. Stubbs , Henry D. Pfister

Imitation learning considerably simplifies policy synthesis compared to alternative approaches by exploiting access to expert demonstrations. For such imitation policies, errors away from the training samples are particularly critical. Even…

机器学习 · 计算机科学 2024-03-19 Kaustubh Sridhar , Souradeep Dutta , Dinesh Jayaraman , James Weimer , Insup Lee

The task of person re-identification has recently received rising attention due to the high performance achieved by new methods based on deep learning. In particular, in the context of video-based re-identification, many state-of-the-art…

计算机视觉与模式识别 · 计算机科学 2018-04-11 Jean-Baptiste Boin , Andre Araujo , Bernd Girod

We demonstrate a machine learning approach designed to extract hidden chemistry/physics to facilitate new materials discovery. In particular, we propose a novel method for learning latent knowledge from material structure data in which…

材料科学 · 物理学 2021-08-03 Tien-Cuong Nguyen , Van-Quyen Nguyen , Van-Linh Ngo , Quang-Khoat Than , Tien-Lam Pham

Pretrained Graph Neural Networks have been widely adopted for various molecular property prediction tasks. Despite their ability to encode structural and relational features of molecules, traditional fine-tuning of such pretrained GNNs on…

机器学习 · 计算机科学 2024-01-30 Vishal Dey , Xia Ning

After the tremendous development of neural networks trained by backpropagation, it is a good time to develop other algorithms for training neural networks to gain more insights into networks. In this paper, we propose a new algorithm for…

机器学习 · 计算机科学 2020-07-01 Benyamin Ghojogh , Fakhri Karray , Mark Crowley

We propose a technique to detect and generate patterns in a network of locally interacting dynamical systems. Central to our approach is a novel spatial superposition logic, whose semantics is defined over the quad-tree of a partitioned…

人工智能 · 计算机科学 2014-09-22 Ebru Aydin Gol , Ezio Bartocci , Calin Belta

We analyze a dataset of retinal images using linear probes: linear regression models trained on some "target" task, using embeddings from a deep convolutional (CNN) model trained on some "source" task as input. We use this method across all…

机器学习 · 计算机科学 2021-07-27 Katy Blumer , Subhashini Venugopalan , Michael P. Brenner , Jon Kleinberg

This paper proposes a novel approach for speech signal prediction based on a recurrent neural network (RNN). Unlike existing RNN-based predictors, which operate on parametric features and are trained offline on a large collection of such…

音频与语音处理 · 电气工程与系统科学 2021-11-17 Reza Lotfidereshgi , Philippe Gournay

Temporal/spatial receptive fields of models play an important role in sequential/spatial tasks. Large receptive fields facilitate long-term relations, while small receptive fields help to capture the local details. Existing methods…

计算机视觉与模式识别 · 计算机科学 2022-06-16 Shanghua Gao , Zhong-Yu Li , Qi Han , Ming-Ming Cheng , Liang Wang

Multimodal models leverage large-scale pre-training to achieve strong but still imperfect performance on tasks such as image captioning, visual question answering, and cross-modal retrieval. In this paper, we present a simple and efficient…

计算机视觉与模式识别 · 计算机科学 2024-11-01 Neil Chowdhury , Franklin Wang , Sumedh Shenoy , Douwe Kiela , Sarah Schwettmann , Tristan Thrush

Synthesizability in generative molecular design remains a pressing challenge. Existing methods to assess synthesizability span heuristics-based methods, retrosynthesis models, and synthesizability-constrained molecular generation. The…

生物大分子 · 定量生物学 2024-07-18 Jeff Guo , Philippe Schwaller

Accurate predictions of peptide retention times (RT) in liquid chromatography have many applications in mass spectrometry-based proteomics. Herein, we present DeepRT, a deep learning based software for peptide retention time prediction.…

定量方法 · 定量生物学 2017-05-17 Chunwei Ma , Zhiyong Zhu , Jun Ye , Jiarui Yang , Jianguo Pei , Shaohang Xu , Ruo Zhou , Chang Yu , Fan Mo , Bo Wen , Siqi Liu

Finding the main product of a chemical reaction is one of the important problems of organic chemistry. This paper describes a method of applying a neural machine translation model to the prediction of organic chemical reactions. In order to…

机器学习 · 计算机科学 2017-01-02 Juno Nam , Jurae Kim

As text and code resources have expanded, large-scale pre-trained models have shown promising capabilities in code generation tasks, typically employing supervised fine-tuning with problem statement-program pairs. However, increasing model…

计算与语言 · 计算机科学 2025-04-10 Nathanaël Beau , Benoît Crabbé

Molecular geometry prediction of flexible molecules, or conformer search, is a long-standing challenge in computational chemistry. This task is of great importance for predicting structure-activity relationships for a wide variety of…

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