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The linear transport properties of a model molecular transistor with electron-electron and electron-phonon interactions were investigated analytically and numerically. The model takes into account phonon modulation of the electronic energy…

介观与纳米尺度物理 · 物理学 2007-05-23 P. S. Cornaglia , D. R. Grempel , H. Ness

We discuss the electronic transport through molecules in the Kondo regime. We concentrate here on the influence of molecular vibrations. Two types of vibrations are investigated: (i) the breathing internal molecular modes, where the…

介观与纳米尺度物理 · 物理学 2009-12-21 J. Mravlje , A. Ramsak

Tunneling of electrons through rotor-stator anthracene aldehyde molecular interfaces is studied with a combined ab initio and model approach. Molecular electronic structure calculated from first principles is utilized to model different…

化学物理 · 物理学 2016-05-27 Irina Petreska , Vladimir Ohanesjan , Ljupco Pejov , Ljupco Kocarev

The interplay of spin-polarized electronic edge states with the dynamics of the host nuclei in quantum Hall systems presents rich and non-trivial transport physics. Here, we develop a Landauer-B\"uttiker approach to understand various…

介观与纳米尺度物理 · 物理学 2018-01-08 Aniket Singha , M. H. Fauzi , Yoshiro Hirayama , Bhaskaran Muralidharan

Examples of self propulsion in strongly fluctuating environment is abound in nature, e.g., molecular motors and pumps operating in living cells. Starting from Langevin equation of motion, we develop a fluctuating thermodynamic description…

统计力学 · 物理学 2015-02-20 Chandrima Ganguly , Debasish Chaudhuri

We propose a very accurate computational scheme for the dynamics of a classical oscillator coupled to a molecular junction driven by a finite bias, including the finite mass effect. We focus on two minimal models for the molecular junction:…

介观与纳米尺度物理 · 物理学 2015-05-20 A. Nocera , C. A. Perroni , V. Marigliano Ramaglia , V. Cataudella

Within the framework of a Boltzmann-Lorentz equation, we analyze the dynamics of a granular rotor immersed in a bath of thermalized particles in the presence of a frictional torque on the axis. In numerical simulations of the equation, we…

统计力学 · 物理学 2015-05-30 Julian Talbot , Ricky D. Wildman , Pascal Viot

In living cells, molecular motors convert chemical energy into mechanical work. Its thermodynamic energy efficiency, i.e. the ratio of output mechanical work to input chemical energy, is usually high. However, using two-state models, we…

生物物理 · 物理学 2015-03-06 Yunxin Zhang

In recent literature there has been a lot of interest in the phenomena of noise induced transport in the absence of an average bias occurring in spatially periodic systems far from equilibrium. One of the main motivations in this area is to…

生物物理 · 物理学 2007-05-23 Raishma Krishnan , A. M. Jayannavar

We describe the effective Lorentz forces on the ions of a generic insulating system in an magnetic field, in the context of Born-Oppenheimer ab-initio molecular dynamics. The force on each ion includes an important contribution of…

材料科学 · 物理学 2007-05-23 D. Ceresoli , R. Marchetti , E. Tosatti

We provide a way of generating and observing molecular quantum gyroscopic motion that resembles gyroscopic motion of classical rotors. After producing a nonspreading rotational wavepacket called a cogwheel state, one can generate a…

量子物理 · 物理学 2015-06-24 Sang Jae Yun , Chang Hee Nam

We investigate theoretically the violations of Einstein and Onsager relations, and the efficiency for a single processive motor operating far from equilibrium using an extension of the two-state model introduced by Kafri {\em et al.}…

软凝聚态物质 · 物理学 2011-03-02 A. W. C. Lau , D. Lacoste , K. Mallick

Three problems in the statistical mechanics of models for an assembly of molecular motors interacting with cytoskeletal filaments are reviewed. First, a description of the hydrodynamical behaviour of density-density correlations in…

统计力学 · 物理学 2009-11-11 Gautam I. Menon

The method of many-body Green's functions is developed for arbitrary systems of electrons and nuclei starting from the full (beyond Born-Oppenheimer) Hamiltonian of Coulomb interactions and kinetic energies. The theory presented here…

其他凝聚态物理 · 物理学 2020-06-23 Ville J. Härkönen , Robert van Leeuwen , E. K. U. Gross

We present a generic coarse-grained model to describe molecular motors acting on polymer substrates, mimicking, for example, RNA polymerase on DNA or kinesin on microtubules. The polymer is modeled as a connected chain of beads; motors are…

软凝聚态物质 · 物理学 2020-10-14 M. Foglino , E. Locatelli , C. A. Brackley , D. Michieletto , C. Likos , D. Marenduzzo

We present general first principles derivation of expression for current-induced forces. The expression is applicable in non-equilibrium molecular systems with arbitrary intra-molecular interactions and for any electron-nuclei coupling. It…

介观与纳米尺度物理 · 物理学 2019-02-05 Feng Chen , Kuniyuki Miwa , Michael Galperin

We study the properties of a heterogeneous, chiral granular rotor that is capable of performing useful work when immersed in a bath of thermalized particles. The dynamics can be obtained in general from a numerical solution of the…

统计力学 · 物理学 2015-05-20 Julian Talbot , Alexis Burdeau , Pascal Viot

Molecular spintronics is made possible by the coupling between electronic configuration and magnetic po- larization of the molecules. For control and application of the individual molecular states it is necessary to both read and write…

介观与纳米尺度物理 · 物理学 2016-04-27 T. Saygun , J. Bylin , H. Hammar , J. Fransson

We propose a stochastic model for intracellular transport processes associated with the activity of molecular motors. This out-of-equilibrium model, based on a generalized Langevin equation, considers a particle immersed in a viscoelastic…

生物物理 · 物理学 2009-04-15 L. Bruno , M. A. Despósito

Molecular motors are macromolecular complexes which use some form of input energy to perform mechanical work. The filamentary tracks, on which these motors move, are made of either proteins (e.g., microtubules) or nucleic acids (DNA or…