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Ontology-based approaches for predicting gene-disease associations include the more classical semantic similarity methods and more recently knowledge graph embeddings. While semantic similarity is typically restricted to hierarchical…

机器学习 · 计算机科学 2021-06-01 Susana Nunes , Rita T. Sousa , Catia Pesquita

Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization,…

机器学习 · 计算机科学 2022-09-13 Said Kerrache , Hafida Benhidour

Patterns stored within pre-trained deep neural networks compose large and powerful descriptive languages that can be used for many different purposes. Typically, deep network representations are implemented within vector embedding spaces,…

With the rising interest in graph representation learning, a variety of approaches have been proposed to effectively capture a graph's properties. While these approaches have improved performance in graph machine learning tasks compared to…

机器学习 · 计算机科学 2019-10-09 Antonia Gogoglou , C. Bayan Bruss , Keegan E. Hines

Recent years have witnessed the successful application of low-dimensional vector space representations of knowledge graphs to predict missing facts or find erroneous ones. However, it is not yet well-understood to what extent ontological…

人工智能 · 计算机科学 2018-08-22 Víctor Gutiérrez-Basulto , Steven Schockaert

Research on knowledge graph embeddings has recently evolved into knowledge base embeddings, where the goal is not only to map facts into vector spaces but also constrain the models so that they take into account the relevant conceptual…

人工智能 · 计算机科学 2024-08-12 Camille Bourgaux , Ricardo Guimarães , Raoul Koudijs , Victor Lacerda , Ana Ozaki

Ontologies are widely used for representing domain knowledge and meta data, playing an increasingly important role in Information Systems, the Semantic Web, Bioinformatics and many other domains. However, logical reasoning that ontologies…

人工智能 · 计算机科学 2025-04-08 Jiaoyan Chen , Olga Mashkova , Fernando Zhapa-Camacho , Robert Hoehndorf , Yuan He , Ian Horrocks

Vector representations of graphs and relational structures, whether hand-crafted feature vectors or learned representations, enable us to apply standard data analysis and machine learning techniques to the structures. A wide range of…

机器学习 · 计算机科学 2020-03-31 Martin Grohe

Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques…

Knowledge graph embeddings are now a widely adopted approach to knowledge representation in which entities and relationships are embedded in vector spaces. In this chapter, we introduce the reader to the concept of knowledge graph…

人工智能 · 计算机科学 2020-05-01 Federico Bianchi , Gaetano Rossiello , Luca Costabello , Matteo Palmonari , Pasquale Minervini

In this study, we focus on the graph representation learning (a.k.a. network embedding) in attributed graphs. Different from existing embedding methods that treat the incorporation of graph structure and semantic as the simple combination…

社会与信息网络 · 计算机科学 2023-05-12 Meng Qin

Ontology embeddings map classes, relations, and individuals in ontologies into $\mathbb{R}^n$, and within $\mathbb{R}^n$ similarity between entities can be computed or new axioms inferred. For ontologies in the Description Logic…

人工智能 · 计算机科学 2024-06-27 Olga Mashkova , Fernando Zhapa-Camacho , Robert Hoehndorf

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

社会与信息网络 · 计算机科学 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Recent works on representation learning for Knowledge Graphs have moved beyond the problem of link prediction, to answering queries of an arbitrary structure. Existing methods are based on ad-hoc mechanisms that require training with a…

人工智能 · 计算机科学 2020-06-25 Daniel Daza , Michael Cochez

We propose a new method for embedding graphs while preserving directed edge information. Learning such continuous-space vector representations (or embeddings) of nodes in a graph is an important first step for using network information…

机器学习 · 计算机科学 2017-09-15 Sami Abu-El-Haija , Bryan Perozzi , Rami Al-Rfou

Graph embedding techniques are pivotal in real-world machine learning tasks that operate on graph-structured data, such as social recommendation and protein structure modeling. Embeddings are mostly performed on the node level for learning…

机器学习 · 计算机科学 2022-04-26 Nan Wang , Lu Lin , Jundong Li , Hongning Wang

Semantic embedding of knowledge graphs has been widely studied and used for prediction and statistical analysis tasks across various domains such as Natural Language Processing and the Semantic Web. However, less attention has been paid to…

人工智能 · 计算机科学 2021-01-26 Jiaoyan Chen , Pan Hu , Ernesto Jimenez-Ruiz , Ole Magnus Holter , Denvar Antonyrajah , Ian Horrocks

Graphs, such as social networks, word co-occurrence networks, and communication networks, occur naturally in various real-world applications. Analyzing them yields insight into the structure of society, language, and different patterns of…

社会与信息网络 · 计算机科学 2019-08-22 Palash Goyal , Emilio Ferrara

Graph analytics can lead to better quantitative understanding and control of complex networks, but traditional methods suffer from high computational cost and excessive memory requirements associated with the high-dimensionality and…

机器学习 · 计算机科学 2020-12-16 Mengjia Xu

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

社会与信息网络 · 计算机科学 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng
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