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We preprocess the raw NMR spectrum and extract key characteristic features by using two different methodologies, called equidistant sampling and peak sampling for subsequent substructure pattern recognition; meanwhile may provide the…

定量方法 · 定量生物学 2021-07-27 Chongcan Li , Yong Cong , Weihua Deng

The potential number of drug like small molecules is estimated to be between 10^23 and 10^60 while current databases of known compounds are orders of magnitude smaller with approximately 10^8 compounds. This discrepancy has led to an…

机器学习 · 计算机科学 2017-05-18 Esben Jannik Bjerrum , Richard Threlfall

To avoid the exhaustive search over locations and scales, current state-of-the-art object detection systems usually involve a crucial component generating a batch of candidate object proposals from images. In this paper, we present a simple…

计算机视觉与模式识别 · 计算机科学 2018-07-31 Tianshui Chen , Liang Lin , Xian Wu , Nong Xiao , Xiaonan Luo

This paper proposes a novel framework for recurrent neural networks (RNNs) inspired by the human memory models in the field of cognitive neuroscience to enhance information processing and transmission between adjacent RNNs' units. The…

神经与进化计算 · 计算机科学 2018-06-05 Xi Chen , Zhihong Deng , Gehui Shen , Ting Huang

Accurate prediction of molecular properties is essential in drug discovery and related fields. However, existing graph neural networks (GNNs) often struggle to simultaneously capture both local and global molecular structures. In this work,…

机器学习 · 计算机科学 2025-08-26 XiaYu Liu , Chao Fan , Yang Liu , Hou-biao Li

Visual attention mechanisms have proven to be integrally important constituent components of many modern deep neural architectures. They provide an efficient and effective way to utilize visual information selectively, which has shown to be…

计算机视觉与模式识别 · 计算机科学 2019-05-24 Siddhesh Khandelwal , Leonid Sigal

In the field of pharmacokinetics and pharmacodynamics (PKPD) modeling, which plays a pivotal role in the drug development process, traditional models frequently encounter difficulties in fully encapsulating the complexities of drug…

定量方法 · 定量生物学 2024-09-23 Nazanin Ahmadi Daryakenari , Shupeng Wang , George Karniadakis

Property prediction on molecular graphs is an important application of Graph Neural Networks. Recently, unlabeled molecular data has become abundant, which facilitates the rapid development of self-supervised learning for GNNs in the…

机器学习 · 计算机科学 2023-10-31 Kha-Dinh Luong , Ambuj Singh

Supervised learning on molecules has incredible potential to be useful in chemistry, drug discovery, and materials science. Luckily, several promising and closely related neural network models invariant to molecular symmetries have already…

机器学习 · 计算机科学 2017-06-14 Justin Gilmer , Samuel S. Schoenholz , Patrick F. Riley , Oriol Vinyals , George E. Dahl

Molecular property prediction is essential in a variety of contemporary scientific fields, such as drug development and designing energy storage materials. Although there are many machine learning models available for this purpose, those…

机器学习 · 计算机科学 2025-06-03 Gihan Panapitiya , Peiyuan Gao , C Mark Maupin , Emily G Saldanha

Psychometric assessment instruments aid clinicians by providing methods of assessing the future risk of adverse events such as aggression. Existing machine learning approaches have treated this as a classification problem, predicting the…

机器学习 · 计算机科学 2023-12-05 Aidan Quinn , Melanie Simmons , Benjamin Spivak , Christoph Bergmeir

In recent years, deep learning techniques have made significant strides in molecular generation for specific targets, driving advancements in drug discovery. However, existing molecular generation methods present significant limitations:…

机器学习 · 计算机科学 2025-03-12 Taojie Kuang , Qianli Ma , Athanasios V. Vasilakos , Yu Wang , Qiang , Cheng , Zhixiang Ren

We describe a new technique which minimizes the amount of neurons in the hidden layer of a random recurrent neural network (rRNN) for time series prediction. Merging Takens-based attractor reconstruction methods with machine learning, we…

神经与进化计算 · 计算机科学 2019-10-23 Bicky A. Marquez , Jose Suarez-Vargas , Bhavin J. Shastri

We introduce a deep residual recurrent neural network (DR-RNN) as an efficient model reduction technique for nonlinear dynamical systems. The developed DR-RNN is inspired by the iterative steps of line search methods in finding the residual…

计算工程、金融与科学 · 计算机科学 2017-09-05 J. Nagoor Kani , Ahmed H. Elsheikh

Elucidating and accurately predicting the druggability and bioactivities of molecules plays a pivotal role in drug design and discovery and remains an open challenge. Recently, graph neural networks (GNN) have made remarkable advancements…

机器学习 · 计算机科学 2022-08-31 Weimin Zhu , Yi Zhang , DuanCheng Zhao , Jianrong Xu , Ling Wang

Recurrent neural networks (RNNs) have been extraordinarily successful for prediction with sequential data. To tackle highly variable and noisy real-world data, we introduce Particle Filter Recurrent Neural Networks (PF-RNNs), a new RNN…

机器学习 · 计算机科学 2019-12-03 Xiao Ma , Peter Karkus , David Hsu , Wee Sun Lee

In this paper, we present an effective deep prediction framework based on robust recurrent neural networks (RNNs) to predict the likely therapeutic classes of medications a patient is taking, given a sequence of diagnostic billing codes in…

机器学习 · 计算机科学 2020-01-29 Deyin Liu , Lin Wu , Xue Li

The new era of artificial intelligence demands large-scale ultrafast hardware for machine learning. Optical artificial neural networks process classical and quantum information at the speed of light, and are compatible with silicon…

医学物理 · 物理学 2018-12-24 D. Pierangeli , V. Palmieri , G. Marcucci , C. Moriconi , G. Perini , M. De Spirito , M. Papi , C. Conti

With the increasing use of nonlinear devices in both generation and consumption of power, it is essential that we develop accurate and quick control for active filters to suppress harmonics. Time delays between input and output are…

系统与控制 · 电气工程与系统科学 2024-10-04 Dixant Bikal Sapkota , Puskar Neupane , Kajal Pokharel , Shahabuddin Khan

Many important phenomena in biochemistry and biology exploit dynamical features such as multi-stability, oscillations, and chaos. Construction of novel chemical systems with such rich dynamics is a challenging problem central to the fields…

分子网络 · 定量生物学 2026-05-04 Alexander Dack , Benjamin Qureshi , Thomas E. Ouldridge , Tomislav Plesa
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