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相关论文: Target Specific De Novo Design of Drug Candidate M…

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Structure-based drug design is drawing growing attentions in computer-aided drug discovery. Compared with the virtual screening approach where a pre-defined library of compounds are computationally screened, de novo drug design based on the…

生物大分子 · 定量生物学 2022-09-14 Kehan Wu , Yingce Xia , Yang Fan , Pan Deng , Haiguang Liu , Lijun Wu , Shufang Xie , Tong Wang , Tao Qin , Tie-Yan Liu

In the scope of drug discovery, the molecular design aims to identify novel compounds from the chemical space where the potential drug-like molecules are estimated to be in the order of 10^60 - 10^100. Since this search task is…

机器学习 · 计算机科学 2022-10-25 Wenlu Wang , Ye Wang , Honggang Zhao , Simone Sciabola

Generating novel drug molecules with desired biological properties is a time consuming and complex task. Conditional generative adversarial models have recently been proposed as promising approaches for de novo drug design. In this paper,…

定量方法 · 定量生物学 2021-10-26 Yuansan Liu , James Bailey

Recently, deep generative models have revealed itself as a promising way of performing de novo molecule design. However, previous research has focused mainly on generating SMILES strings instead of molecular graphs. Although current graph…

定量方法 · 定量生物学 2018-04-24 Yibo Li , Liangren Zhang , Zhenming Liu

Traditional drug design faces significant challenges due to inherent chemical and biological complexities, often resulting in high failure rates in clinical trials. Deep learning advancements, particularly generative models, offer potential…

Recently, deep generative models for molecular graphs are gaining more and more attention in the field of de novo drug design. A variety of models have been developed to generate topological structures of drug-like molecules, but…

定量方法 · 定量生物学 2021-09-16 Yibo Li , Jianfeng Pei , Luhua Lai

De novo molecule generation often results in chemically unfeasible molecules. A natural idea to mitigate this problem is to bias the search process towards more easily synthesizable molecules using a proxy for synthetic accessibility.…

Deep generative models, such as generative adversarial networks (GANs), have been employed for $de~novo$ molecular generation in drug discovery. Most prior studies have utilized reinforcement learning (RL) algorithms, particularly Monte…

生物大分子 · 定量生物学 2025-09-09 Huidong Tang , Chen Li , Sayaka Kamei , Yoshihiro Yamanishi , Yasuhiko Morimoto

The integration of artificial intelligence (AI) in early-stage drug discovery offers unprecedented opportunities for exploring chemical space and accelerating hit-to-lead optimization. However, docking optimization in generative approaches…

Traditional drug discovery programs are being transformed by the advent of machine learning methods. Among these, Generative AI methods (GM) have gained attention due to their ability to design new molecules and enhance specific properties…

De novo design of molecules has recently enjoyed the power of generative deep neural networks. Current approaches aim to generate molecules either resembling the properties of the molecules of the training set or molecules that are…

生物大分子 · 定量生物学 2020-11-02 Ahmadreza Ghanbarpour , Markus A. Lill

Drug targets are the main focus of drug discovery due to their key role in disease pathogenesis. Computational approaches are widely applied to drug development because of the increasing availability of biological molecular datasets.…

机器学习 · 计算机科学 2022-12-06 Junde Li , Collin Beaudoin , Swaroop Ghosh

The de novo design of molecular structures using deep learning generative models introduces an encouraging solution to drug discovery in the face of the continuously increased cost of new drug development. From the generation of original…

生物大分子 · 定量生物学 2021-02-08 Yuemin Bian , Xiang-Qun Xie

De novo molecular design has facilitated the exploration of large chemical space to accelerate drug discovery. Structure-based de novo method can overcome the data scarcity of active ligands by incorporating drug-target interaction into…

生物大分子 · 定量生物学 2022-09-16 Yaqin Li , Lingli Li , Yongjin Xu , Yi Yu

Recent advances in deep learning have accelerated its use in various applications, such as cellular image analysis and molecular discovery. In molecular discovery, a generative adversarial network (GAN), which comprises a discriminator to…

机器学习 · 计算机科学 2023-04-13 Daniel Manu , Jingjing Yao , Wuji Liu , Xiang Sun

To design a drug given a biological molecule by using deep learning methods, there are many successful models published recently. People commonly used generative models to design new molecules given certain protein. LiGAN was regarded as…

机器学习 · 计算机科学 2022-11-15 Haotian Zhang , Linxiaoyi Wan

Deep neural networks have been applied in wireless communications system to intelligently adapt to dynamically changing channel conditions, while the users are still under the threat of the malicious attacks due to the broadcasting property…

信息论 · 计算机科学 2025-05-02 Jianyuan Chen , Lin Zhang , Zuwei Chen , Yawen Chen , Hongcheng Zhuang

De novo drug design is a pivotal issue in pharmacology and a new area of focus in AI for science research. A central challenge in this field is to generate molecules with specific properties while also producing a wide range of diverse…

生物大分子 · 定量生物学 2024-01-15 Xiuyuan Hu , Guoqing Liu , Yang Zhao , Hao Zhang

Node representation learning for directed graphs is critically important to facilitate many graph mining tasks. To capture the directed edges between nodes, existing methods mostly learn two embedding vectors for each node, source vector…

社会与信息网络 · 计算机科学 2021-05-25 Shijie Zhu , Jianxin Li , Hao Peng , Senzhang Wang , Lifang He

PROteolysis TArgeting Chimeras (PROTACs) are an emerging therapeutic modality for degrading a protein of interest (POI) by marking it for degradation by the proteasome. Recent developments in artificial intelligence (AI) suggest that deep…

定量方法 · 定量生物学 2022-11-08 Divya Nori , Connor W. Coley , Rocío Mercado
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