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Edit distance is a measurement of similarity between two sequences such as strings, point sequences, or polygonal curves. Many matching problems from a variety of areas, such as signal analysis, bioinformatics, etc., need to be solved in a…

计算几何 · 计算机科学 2020-09-10 Kyle Fox , Xinyi Li

The edit distance between two strings is defined as the smallest number of insertions, deletions, and substitutions that need to be made to transform one of the strings to another one. Approximating edit distance in subquadratic time is…

数据结构与算法 · 计算机科学 2018-04-27 Mahdi Boroujeni , Soheil Ehsani , Mohammad Ghodsi , MohammadTaghi HajiAghayi , Saeed Seddighin

We present an algorithm for approximating the edit distance between two strings of length $n$ in time $n^{1+\varepsilon}$ up to a constant factor, for any $\varepsilon>0$. Our result completes a research direction set forth in the recent…

数据结构与算法 · 计算机科学 2022-07-18 Alexandr Andoni , Negev Shekel Nosatzki

The edit distance (a.k.a. the Levenshtein distance) between two strings is defined as the minimum number of insertions, deletions or substitutions of symbols needed to transform one string into another. The problem of computing the edit…

计算复杂性 · 计算机科学 2017-08-17 Arturs Backurs , Piotr Indyk

Edit distance is a measure of similarity of two strings based on the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. The edit distance can be computed exactly using a…

数据结构与算法 · 计算机科学 2021-02-17 Diptarka Chakraborty , Debarati Das , Elazar Goldenberg , Michal Koucky , Michael Saks

The normalized edit distance is one of the distances derived from the edit distance. It is useful in some applications because it takes into account the lengths of the two strings compared. The normalized edit distance is not defined in…

神经与进化计算 · 计算机科学 2013-12-09 Muhammad Marwan Muhammad Fuad

The edit distance of two strings is the minimum number of insertions, deletions, and substitutions of characters needed to transform one string into the other. The textbook dynamic-programming algorithm computes the edit distance of two…

数据结构与算法 · 计算机科学 2023-10-25 Alejandro Cassis , Tomasz Kociumaka , Philip Wellnitz

Edit distance is an important measure of string similarity. It counts the number of insertions, deletions and substitutions one has to make to a string $x$ to get a string $y$. In this paper we design an almost linear-size sketching scheme…

数据结构与算法 · 计算机科学 2024-06-18 Michal Koucký , Michael Saks

Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…

数据结构与算法 · 计算机科学 2018-05-08 Moses Charikar , Ofir Geri , Michael P. Kim , William Kuszmaul

Many problems that can be solved in quadratic time have bit-parallel speed-ups with factor $w$, where $w$ is the computer word size. For example, edit distance of two strings of length $n$ can be solved in $O(n^2/w)$ time. In a reasonable…

量子物理 · 物理学 2023-02-07 Massimo Equi , Arianne Meijer-van de Griend , Veli Mäkinen

The edit distance is a basic string similarity measure used in many applications such as text mining, signal processing, bioinformatics, and so on. However, the computational cost can be a problem when we repeat many distance calculations…

数据结构与算法 · 计算机科学 2017-01-24 Hiroyuki Hanada , Mineichi Kudo , Atsuyoshi Nakamura

We present a near-linear time algorithm that approximates the edit distance between two strings within a polylogarithmic factor; specifically, for strings of length n and every fixed epsilon>0, it can compute a (log n)^O(1/epsilon)…

数据结构与算法 · 计算机科学 2010-05-24 Alexandr Andoni , Robert Krauthgamer , Krzysztof Onak

The edit distance is a fundamental measure of sequence similarity, defined as the minimum number of character insertions, deletions, and substitutions needed to transform one string into the other. Given two strings of length at most $n$,…

数据结构与算法 · 计算机科学 2023-07-17 Tomasz Kociumaka , Anish Mukherjee , Barna Saha

The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. A simple dynamic…

计算复杂性 · 计算机科学 2019-10-03 Elazar Goldenberg , Robert Krauthgamer , Barna Saha

We show that the edit distance between two strings of length $n$ can be computed within a factor of $f(\epsilon)$ in $n^{1+\epsilon}$ time as long as the edit distance is at least $n^{1-\delta}$ for some $\delta(\epsilon) > 0$.

数据结构与算法 · 计算机科学 2020-01-29 Joshua Brakensiek , Aviad Rubinstein

The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we…

数据结构与算法 · 计算机科学 2016-07-14 Diptarka Chakraborty , Elazar Goldenberg , Michal Koucký

We study the problem of estimating the edit distance between two $n$-character strings. While exact computation in the worst case is believed to require near-quadratic time, previous work showed that in certain regimes it is possible to…

数据结构与算法 · 计算机科学 2020-07-29 Joshua Brakensiek , Moses Charikar , Aviad Rubinstein

We study the fundamental problem of approximating the edit distance of two strings. After an extensive line of research led to the development of a constant-factor approximation algorithm in almost-linear time, recent years have witnessed a…

数据结构与算法 · 计算机科学 2023-12-05 Karl Bringmann , Alejandro Cassis , Nick Fischer , Tomasz Kociumaka

Given two strings of length $n$ over alphabet $\Sigma$, and an upper bound $k$ on their edit distance, the algorithm of Myers (Algorithmica'86) and Landau and Vishkin (JCSS'88) computes the unweighted string edit distance in…

数据结构与算法 · 计算机科学 2023-02-09 Debarati Das , Jacob Gilbert , MohammadTaghi Hajiaghayi , Tomasz Kociumaka , Barna Saha

We show how to compute the edit distance between two strings of length n up to a factor of 2^{\~O(sqrt(log n))} in n^(1+o(1)) time. This is the first sub-polynomial approximation algorithm for this problem that runs in near-linear time,…

数据结构与算法 · 计算机科学 2011-09-27 Alexandr Andoni , Krzysztof Onak
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