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Familiarizing oneself with a new scientific field and its existing literature can be daunting due to the large amount of available articles. Curated lists of academic references, or reading lists, compiled by experts, offer a structured way…

数字图书馆 · 计算机科学 2025-02-25 Julien Aubert-Béduchaud , Florian Boudin , Béatrice Daille , Richard Dufour

Generative artificial intelligence (AI) tools are becoming increasingly used for writing tasks. However, the extent of their use in peer-reviewed medical literature remains unclear. We conducted a longitudinal analysis of all Original…

A great part of software development involves conceptualizing or communicating the underlying procedures and logic that needs to be expressed in programs. One major difficulty of programming is turning concept into code, especially when…

软件工程 · 计算机科学 2021-09-23 Frank F. Xu , Bogdan Vasilescu , Graham Neubig

Preprints are essential for the timely and open dissemination of research. arXiv, the most widely used preprint service, takes the idea of open science one step further by not only publishing the actual preprints but also LaTeX sources and…

密码学与安全 · 计算机科学 2026-05-11 Jan Pennekamp , Johannes Lohmöller , David Schütte , Joscha Loos , Martin Henze

We participated in the KDD CUP 2024 paper source tracing competition and achieved the 3rd place. This competition tasked participants with identifying the reference sources (i.e., ref-sources, as referred to by the organizers of the…

机器学习 · 计算机科学 2024-09-18 Kunlong Chen , Junjun Wang , Zhaoqun Chen , Kunjin Chen , Yitian Chen

In recent years, the use of deep learning in language models gained much attention. Some research projects claim that they can generate text that can be interpreted as human-writing, enabling new possibilities in many application areas.…

计算与语言 · 计算机科学 2021-01-13 Juan Cruz-Benito , Sanjay Vishwakarma , Francisco Martin-Fernandez , Ismael Faro

Finding relevant publications is important for scientists who have to cope with exponentially increasing numbers of scholarly material. Algorithms can help with this task as they help for music, movie, and product recommendations. However,…

信息检索 · 计算机科学 2016-09-28 Titipat Achakulvisut , Daniel E. Acuna , Tulakan Ruangrong , Konrad Kording

The value of structured scholarly knowledge for research and society at large is well understood, but producing scholarly knowledge (i.e., knowledge traditionally published in articles) in structured form remains a challenge. We propose an…

数字图书馆 · 计算机科学 2023-12-06 Muhammad Haris , Sören Auer , Markus Stocker

High-performance computing (HPC) centers consume substantial power, incurring environmental and operational costs. This review assesses how artificial intelligence (AI), including machine learning (ML) and optimization, improves the…

分布式、并行与集群计算 · 计算机科学 2026-02-03 Pierrick Pochelu , Hyacinthe Cartiaux , Julien Schleich

Large language models (LLMs) are increasingly used to automate data analysis through executable code generation. Yet, data science tasks often admit multiple statistically valid solutions, e.g. different modeling strategies, making it…

机器学习 · 计算机科学 2025-11-10 Qiuhai Zeng , Claire Jin , Xinyue Wang , Yuhan Zheng , Qunhua Li

Efficient reproduction of research papers is pivotal to accelerating scientific progress. However, the increasing complexity of proposed methods often renders reproduction a labor-intensive endeavor, necessitating profound domain expertise.…

人工智能 · 计算机科学 2026-04-27 Xuanle Zhao , Zilin Sang , Yuxuan Li , Qi Shi , Weilun Zhao , Shuo Wang , Duzhen Zhang , Xu Han , Zhiyuan Liu , Maosong Sun

Artificial intelligence (AI) is increasingly being explored as a tool to support pharmacometric modeling, particularly in addressing the coding challenges associated with NONMEM. In this study, we evaluated the ability of seven AI agents to…

其他定量生物学 · 定量生物学 2025-07-14 Wenhao Zheng , Wanbing Wang , Carl M. J. Kirkpatrick , Cornelia B. Landersdorfer , Huaxiu Yao , Jiawei Zhou

Many people are interested in ChatGPT since it has become a prominent AIGC model that provides high-quality responses in various contexts, such as software development and maintenance. Misuse of ChatGPT might cause significant issues,…

数字图书馆 · 计算机科学 2024-03-22 Arslan Akram

Frequently asked questions (FAQs) are a popular way to document software development knowledge. As creating such documents is expensive, this paper presents an approach for automatically extracting FAQs from sources of software development…

软件工程 · 计算机科学 2018-07-06 Stefan Henß , Martin Monperrus , Mira Mezini

This systematic review of the research literature on retrieval-augmented generation (RAG) provides a focused analysis of the most highly cited studies published between 2020 and May 2025. A total of 128 articles met our inclusion criteria.…

数字图书馆 · 计算机科学 2025-09-10 Andrew Brown , Muhammad Roman , Barry Devereux

Program code as a data source is gaining popularity in the data science community. Possible applications for models trained on such assets range from classification for data dimensionality reduction to automatic code generation. However,…

软件工程 · 计算机科学 2022-10-31 Anastasia Drozdova , Polina Guseva , Ekaterina Trofimova , Anna Scherbakova , Andrey Ustyuzhanin

Traditional code search engines often do not perform well with natural language queries since they mostly apply keyword matching. These engines thus require carefully designed queries containing information about programming APIs for code…

软件工程 · 计算机科学 2018-07-13 Mohammad Masudur Rahman , Chanchal K. Roy , David Lo

Large language models trained on source code can support a variety of software development tasks, such as code recommendation and program repair. Large amounts of data for training such models benefit the models' performance. However, the…

软件工程 · 计算机科学 2023-07-06 Max Hort , Anastasiia Grishina , Leon Moonen

Recent advances in large language models (LLMs) have fueled the vision of automated scientific discovery, often called AI Co-Scientists. To date, prior work casts these systems as generative co-authors responsible for crafting hypotheses,…

While AI coding tools have demonstrated potential to accelerate software development, their use in scientific computing raises critical questions about code quality and scientific validity. In this paper, we provide ten practical rules for…

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