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Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

计算与语言 · 计算机科学 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

We apply deep learning-based language models to the task of patient cohort retrieval (CR) with the aim to assess their efficacy. The task of CR requires the extraction of relevant documents from the electronic health records (EHRs) on the…

信息检索 · 计算机科学 2020-09-14 Sarvesh Soni , Kirk Roberts

Communication of follow-up recommendations when abnormalities are identified on imaging studies is prone to error. In this paper, we present a natural language processing approach based on deep learning to automatically identify clinically…

计算与语言 · 计算机科学 2019-05-16 Wilson Lau , Thomas H Payne , Ozlem Uzuner , Meliha Yetisgen

Content-based retrieval supports a radiologist decision making process by presenting the doctor the most similar cases from the database containing both historical diagnosis and further disease development history. We present a deep…

信息检索 · 计算机科学 2020-07-15 Ilia Kravets , Tal Heletz , Hayit Greenspan

We explore why deep convolutional neural networks (CNNs) with small two-dimensional kernels, primarily used for modeling spatial relations in images, are also effective in speech recognition. We analyze the representations learned by deep…

计算与语言 · 计算机科学 2018-11-13 Joanna Rownicka , Peter Bell , Steve Renals

Purpose: To develop high throughput multi-label annotators for body (chest, abdomen, and pelvis) Computed Tomography (CT) reports that can be applied across a variety of abnormalities, organs, and disease states. Approach: We used a…

Initial fault detection and diagnostics are imperative measures to improve the efficiency, safety, and stability of vehicle operation. In recent years, numerous studies have investigated data-driven approaches to improve the vehicle…

系统与控制 · 电气工程与系统科学 2021-12-01 Ali Khodadadi , Soroush Ghandiparsi , Chen-Nee Chuah

Within the world of machine learning there exists a wide range of different methods with respective advantages and applications. This paper seeks to present and discuss one such method, namely Convolutional Neural Networks (CNNs). CNNs are…

计算机视觉与模式识别 · 计算机科学 2020-11-30 Lars Lien Ankile , Morgan Feet Heggland , Kjartan Krange

End-to-end deep learning improves breast cancer classification on diffusion-weighted MR images (DWI) using a convolutional neural network (CNN) architecture. A limitation of CNN as opposed to previous model-based approaches is the…

The current state of adoption of well-structured electronic health records and integration of digital methods for storing medical patient data in structured formats can often considered as inferior compared to the use of traditional,…

计算与语言 · 计算机科学 2021-12-13 Johann Frei , Frank Kramer

The paper presents a novel deep learning approach, which extracts latent information from trained Deep Neural Networks (DNNs) and derives concise representations that are analyzed in an effective, unified way for prediction purposes. It is…

机器学习 · 计算机科学 2020-09-22 D. Kollias , N. Bouas , Y. Vlaxos , V. Brillakis , M. Seferis , I. Kollia , L. Sukissian , J. Wingate , S. Kollias

Large language models (LLMs) have emerged as transformative tools in medicine, with strong capabilities in language understanding, reasoning, and structured information extraction. Radiation oncology is particularly well suited for LLM…

PURPOSE: Incident reports are an important tool for safety and quality improvement in healthcare, but manual review is time-consuming and requires subject matter expertise. Here we present a natural language processing (NLP) screening tool…

计算与语言 · 计算机科学 2025-09-18 Peter Beidler , Mark Nguyen , Kevin Lybarger , Ola Holmberg , Eric Ford , John Kang

Histopathology has played an essential role in cancer diagnosis. With the rapid advances in convolutional neural networks (CNN). Various CNN-based automated pathological image segmentation approaches have been developed in computer-assisted…

图像与视频处理 · 电气工程与系统科学 2021-09-23 Cam Nguyen , Zuhayr Asad , Yuankai Huo

Deep neural networks have shown promising results for various clinical prediction tasks. However, training deep networks such as those based on Recurrent Neural Networks (RNNs) requires large labeled data, significant hyper-parameter tuning…

机器学习 · 计算机科学 2021-03-05 Priyanka Gupta , Pankaj Malhotra , Jyoti Narwariya , Lovekesh Vig , Gautam Shroff

Data-driven models achieve successful results in Speech Emotion Recognition (SER). However, these models, which are often based on general acoustic features or end-to-end approaches, show poor performance when the testing set has a…

音频与语音处理 · 电气工程与系统科学 2025-12-15 Duowei Tang , Peter Kuppens , Lucca Geurts , Toon van Waterschoot

The use of deep learning (DL) in medical image analysis has significantly improved the ability to predict lung cancer. In this study, we introduce a novel deep convolutional neural network (CNN) model, named ResNet+, which is based on the…

图像与视频处理 · 电气工程与系统科学 2025-07-03 Ahmad Chaddad , Jihao Peng , Yihang Wu

Purpose: To develop and evaluate an automated system for extracting structured clinical information from unstructured radiology and pathology reports using open-weights large language models (LMs) and retrieval augmented generation (RAG),…

Radiology reports are often lengthy and unstructured, posing challenges for referring physicians to quickly identify critical imaging findings while increasing the risk of missed information. This retrospective study aimed to enhance…

计算与语言 · 计算机科学 2025-06-05 Iryna Hartsock , Cyrillo Araujo , Les Folio , Ghulam Rasool

Radiographs are a versatile diagnostic tool for the detection and assessment of pathologies, for treatment planning or for navigation and localization purposes in clinical interventions. However, their interpretation and assessment by…

计算机视觉与模式识别 · 计算机科学 2022-08-18 Finn Behrendt , Debayan Bhattacharya , Julia Krüger , Roland Opfer , Alexander Schlaefer