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The Transformer architecture has gained growing attention in graph representation learning recently, as it naturally overcomes several limitations of graph neural networks (GNNs) by avoiding their strict structural inductive biases and…

机器学习 · 统计学 2022-06-14 Dexiong Chen , Leslie O'Bray , Karsten Borgwardt

Recently, metamaterials-inspired diffraction gratings (or metagratings) have demonstrated unprecedented efficiency in wavefront manipulation by means of relatively simple structures. Conventional one-dimensional (1D) gratings have a profile…

Graphs are a commonly used construct for representing relationships between elements in complex high dimensional datasets. Many real-world phenomenon are dynamic in nature, meaning that any graph used to represent them is inherently…

社会与信息网络 · 计算机科学 2018-11-21 Stephen Bonner , John Brennan , Ibad Kureshi , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

Machine learning in atomistic materials science has grown to become a powerful tool, with most approaches focusing on atomic arrangements, typically decomposed into local atomic environments. This approach, while well-suited for…

材料科学 · 物理学 2025-03-12 Austin Zadoks , Antimo Marrazzo , Nicola Marzari

Architected materials possessing physico-chemical properties adaptable to disparate environmental conditions embody a disruptive new domain of materials science. Fueled by advances in digital design and fabrication, materials shaped into…

材料科学 · 物理学 2023-09-25 Dominik Dold , Derek Aranguren van Egmond

Machine learning has revolutionized many fields, including materials science. However, predicting properties of crystalline materials using machine learning faces challenges in input encoding, output versatility, and interpretability. We…

材料科学 · 物理学 2025-05-22 Haosheng Xu , Dongheng Qian , Jing Wang

Transformers have been designed for channel acquisition tasks such as channel prediction and other tasks such as precoding, while graph neural networks (GNNs) have been demonstrated to be efficient for learning a multitude of communication…

信号处理 · 电气工程与系统科学 2025-03-06 Yuxuan Duan , Jia Guo , Chenyang Yang

To improve persistence diagram representation learning, we propose Multiset Transformer. This is the first neural network that utilizes attention mechanisms specifically designed for multisets as inputs and offers rigorous theoretical…

机器学习 · 计算机科学 2024-11-25 Minghua Wang , Ziyun Huang , Jinhui Xu

Proposing an effective and flexible matrix to represent a graph is a fundamental challenge that has been explored from multiple perspectives, e.g., filtering in Graph Fourier Transforms. In this work, we develop a novel and general…

机器学习 · 计算机科学 2023-05-11 Mingqi Yang , Wenjie Feng , Yanming Shen , Bryan Hooi

Learning effective protein representations is critical in a variety of tasks in biology such as predicting protein function or structure. Existing approaches usually pretrain protein language models on a large number of unlabeled amino acid…

机器学习 · 计算机科学 2023-01-31 Zuobai Zhang , Minghao Xu , Arian Jamasb , Vijil Chenthamarakshan , Aurelie Lozano , Payel Das , Jian Tang

Predicting properties of crystals from their structures is a fundamental yet challenging task in materials science. Unlike molecules, crystal structures exhibit infinite periodic arrangements of atoms, requiring methods capable of capturing…

机器学习 · 计算机科学 2025-09-29 Jianan Nie , Peiyao Xiao , Kaiyi Ji , Peng Gao

Scattering transforms are non-trainable deep convolutional architectures that exploit the multi-scale resolution of a wavelet filter bank to obtain an appropriate representation of data. More importantly, they are proven invariant to…

机器学习 · 计算机科学 2019-06-13 Fernando Gama , Joan Bruna , Alejandro Ribeiro

Time series analysis finds wide applications in fields such as weather forecasting, anomaly detection, and behavior recognition. Previous methods attempted to model temporal variations directly using 1D time series. However, this has been…

机器学习 · 计算机科学 2024-11-08 Qiang Wu , Gechang Yao , Zhixi Feng , Shuyuan Yang

Polymers are large macromolecules composed of repeating structural units known as monomers and are widely applied in fields such as energy storage, construction, medicine, and aerospace. However, existing graph neural network methods,…

机器学习 · 计算机科学 2026-01-06 Yihan Zhu , Gang Liu , Eric Inae , Tengfei Luo , Meng Jiang

One of the main challenges of Topological Data Analysis (TDA) is to extract features from persistent diagrams directly usable by machine learning algorithms. Indeed, persistence diagrams are intrinsically (multi-)sets of points in…

机器学习 · 计算机科学 2022-09-27 Raphael Reinauer , Matteo Caorsi , Nicolas Berkouk

We present a new approach to 3D object representation where a neural network encodes the geometry of an object directly into the weights and biases of a second 'mapping' network. This mapping network can be used to reconstruct an object by…

机器学习 · 计算机科学 2020-04-07 Eric Mitchell , Selim Engin , Volkan Isler , Daniel D Lee

Predicting electronic band structures from crystal structures is crucial for understanding structure-property correlations in materials science. First-principles approaches are accurate but computationally intensive. Recent years, machine…

材料科学 · 物理学 2025-10-02 Weiyi Gong , Tao Sun , Hexin Bai , Jeng-Yuan Tsai , Haibin Ling , Qimin Yan

Transformers process tokens in parallel but are temporally shallow: at position $t$, each layer attends to key-value pairs computed based on the previous layer, yielding a depth capped by the number of layers. Recurrent models offer…

机器学习 · 计算机科学 2026-04-24 Costin-Andrei Oncescu , Depen Morwani , Samy Jelassi , Alexandru Meterez , Mujin Kwun , Sham Kakade

Temporal Knowledge Graph (TKG) reasoning often involves completing missing factual elements along the timeline. Although existing methods can learn good embeddings for each factual element in quadruples by integrating temporal information,…

人工智能 · 计算机科学 2024-05-02 Zhiyu Fang , Shuai-Long Lei , Xiaobin Zhu , Chun Yang , Shi-Xue Zhang , Xu-Cheng Yin , Jingyan Qin

Generative models have achieved impressive results in many domains including image and text generation. In the natural sciences, generative models have led to rapid progress in automated drug discovery. Many of the current methods focus on…

机器学习 · 计算机科学 2019-09-04 Jordan Hoffmann , Louis Maestrati , Yoshihide Sawada , Jian Tang , Jean Michel Sellier , Yoshua Bengio