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This paper describes a novel approach to neighbour-finding in Smoothed Particle Hydrodynamics (SPH) simulations with large dynamic range in smoothing length. This approach is based on hierarchical cell decompositions, sorted interactions,…

天体物理仪器与方法 · 物理学 2013-09-17 Pedro Gonnet , Matthieu Schaller , Tom Theuns , Aidan B. G. Chalk

Modern compute nodes in high-performance computing provide a tremendous level of parallelism and processing power. However, as arithmetic performance has been observed to increase at a faster rate relative to memory and network bandwidths,…

分布式、并行与集群计算 · 计算机科学 2022-05-11 Johannes Pekkilä , Miikka S. Väisälä , Maarit J. Käpylä , Matthias Rheinhardt , Oskar Lappi

Heterogeneous graph neural networks (HGNNs) have emerged as powerful algorithms for processing heterogeneous graphs (HetGs), widely used in many critical fields. To capture both structural and semantic information in HetGs, HGNNs first…

硬件体系结构 · 计算机科学 2024-04-29 Runzhen Xue , Dengke Han , Mingyu Yan , Mo Zou , Xiaocheng Yang , Duo Wang , Wenming Li , Zhimin Tang , John Kim , Xiaochun Ye , Dongrui Fan

Range minimum queries are frequently used in string processing and database applications including biological sequence analysis, document retrieval, and web search. Hence, various data structures have been proposed for improving their…

数据库 · 计算机科学 2026-04-03 Lara Kreis , Justus Henneberg , Valentin Henkys , Felix Schuhknecht , Bertil Schmidt

Optimizing the performance of stencil algorithms has been the subject of intense research over the last two decades. Since many stencil schemes have low arithmetic intensity, most optimizations focus on increasing the temporal data access…

分布式、并行与集群计算 · 计算机科学 2015-10-19 Tareq Malas , Georg Hager , Hatem Ltaief , David Keyes

Registers are the fastest memory components within the GPU's complex memory hierarchy, accessed by names rather than addresses. They are managed entirely by the compiler through a process called register allocation, during which the…

分布式、并行与集群计算 · 计算机科学 2025-01-28 Deniz Elbek , Kamer Kaya

Priority queue, often implemented as a heap, is an abstract data type that has been used in many well-known applications like Dijkstra's shortest path algorithm, Prim's minimum spanning tree, Huffman encoding, and the branch-and-bound…

分布式、并行与集群计算 · 计算机科学 2019-06-18 Yanhao Chen , Fei Hua , Chaozhang Huang , Jeremy Bierema , Chi Zhang , Eddy Z. Zhang

The ever-increasing computation and energy demand for LLM and AI agents call for holistic and efficient optimization of LLM serving systems. In practice, heterogeneous GPU clusters can be deployed in a geographically distributed manner,…

分布式、并行与集群计算 · 计算机科学 2025-11-06 Xuan He , Zequan Fang , Jinzhao Lian , Danny H. K. Tsang , Baosen Zhang , Yize Chen

Comprehending the performance bottlenecks at the core of the intricate hardware-software interactions exhibited by highly parallel programs on HPC clusters is crucial. This paper sheds light on the issue of automatically asynchronous MPI…

分布式、并行与集群计算 · 计算机科学 2023-09-06 Ayesha Afzal , Georg Hager , Stefano Markidis , Gerhard Wellein

With the growing number of data-intensive workloads, GPU, which is the state-of-the-art single-instruction-multiple-thread (SIMT) processor, is hindered by the memory bandwidth wall. To alleviate this bottleneck, previously proposed…

硬件体系结构 · 计算机科学 2021-03-12 Xinfeng Xie , Peng Gu , Yufei Ding , Dimin Niu , Hongzhong Zheng , Yuan Xie

In this work, we consider the solution of boundary integral equations by means of a scalable hierarchical matrix approach on clusters equipped with graphics hardware, i.e. graphics processing units (GPUs). To this end, we extend our…

数学软件 · 计算机科学 2018-07-02 Helmut Harbrecht , Peter Zaspel

Modern computing paradigms, such as cloud computing, are increasingly adopting GPUs to boost their computing capabilities primarily due to the heterogeneous nature of AI/ML/deep learning workloads. However, the energy consumption of GPUs is…

分布式、并行与集群计算 · 计算机科学 2020-04-29 Shashikant Ilager , Rajeev Muralidhar , Kotagiri Rammohanrao , Rajkumar Buyya

Graph analytics are vital in fields such as social networks, biomedical research, and graph neural networks (GNNs). However, traditional CPUs and GPUs struggle with the memory bottlenecks caused by large graph datasets and their…

硬件体系结构 · 计算机科学 2024-11-25 Oluwole Jaiyeoba , Abdullah T. Mughrabi , Morteza Baradaran , Beenish Gul , Kevin Skadron

We present a GPU implementation of LAMMPS, a widely-used parallel molecular dynamics (MD) software package, and show 5x to 13x single node speedups versus the CPU-only version of LAMMPS. This new CUDA package for LAMMPS also enables…

材料科学 · 物理学 2011-03-08 Christian R. Trott , Lars Winterfeld , Paul S. Crozier

Graphics Processing Units (GPUs) are high performance co-processors originally intended to improve the use and quality of computer graphics applications. Once, researchers and practitioners noticed the potential of using GPU for general…

数值分析 · 计算机科学 2016-07-12 K. Parand , Saeed Zafarvahedian , Sayyed A. Hossayni

Optimizing deep learning algorithms currently requires slow, manual derivation, potentially leaving much performance untapped. Methods like FlashAttention have achieved a x6 performance improvement over native PyTorch by avoiding…

机器学习 · 计算机科学 2025-01-22 Vincent Abbott , Gioele Zardini

The range, segment and rectangle query problems are fundamental problems in computational geometry, and have extensive applications in many domains. Despite the significant theoretical work on these problems, efficient implementations can…

计算几何 · 计算机科学 2018-08-08 Yihan Sun , Guy E. Blelloch

Sparse linear systems are typically solved using preconditioned iterative methods, but applying preconditioners via sparse triangular solves introduces bottlenecks due to irregular memory accesses and data dependencies. This work leverages…

性能 · 计算机科学 2025-08-08 Atharva Gondhalekar , Kjetil Haugen , Thomas Gibson , Wu-chun Feng

When multiple processor cores (CPUs) and a GPU integrated together on the same chip share the off-chip DRAM, requests from the GPU can heavily interfere with requests from the CPUs, leading to low system performance and starvation of cores.…

硬件体系结构 · 计算机科学 2018-05-01 Rachata Ausavarungnirun , Gabriel H. Loh , Lavanya Subramanian , Kevin Chang , Onur Mutlu

Implicit methods and GPU parallelization are two distinct yet powerful strategies for accelerating high-order CFD algorithms. However, few studies have successfully integrated both approaches within high-speed flow solvers. The core…

数值分析 · 数学 2025-09-09 Hongyu Liu , Xing Ji , Yuan Fu , Kun Xu