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Multimodal survival methods combining gigapixel histology whole-slide images (WSIs) and transcriptomic profiles are particularly promising for patient prognostication and stratification. Current approaches involve tokenizing the WSIs into…

计算机视觉与模式识别 · 计算机科学 2024-07-02 Andrew H. Song , Richard J. Chen , Guillaume Jaume , Anurag J. Vaidya , Alexander S. Baras , Faisal Mahmood

We present FIT: a transformer-based architecture with efficient self-attention and adaptive computation. Unlike original transformers, which operate on a single sequence of data tokens, we divide the data tokens into groups, with each group…

机器学习 · 计算机科学 2023-05-26 Ting Chen , Lala Li

Medical image segmentation has made significant progress in recent years. Deep learning-based methods are recognized as data-hungry techniques, requiring large amounts of data with manual annotations. However, manual annotation is expensive…

计算机视觉与模式识别 · 计算机科学 2023-09-22 Yi Lin , Yufan Chen , Kwang-Ting Cheng , Hao Chen

Artificial intelligence (AI) has significantly improved medical screening accuracy, particularly in cancer detection and risk assessment. However, traditional classification metrics often fail to account for imbalanced data, varying…

机器学习 · 计算机科学 2025-10-28 Longfei Wei , Fang Sheng , Jianfei Zhang

This paper presents a novel attention-based neural network for structured reconstruction, which takes a 2D raster image as an input and reconstructs a planar graph depicting an underlying geometric structure. The approach detects corners…

计算机视觉与模式识别 · 计算机科学 2022-06-22 Jiacheng Chen , Yiming Qian , Yasutaka Furukawa

In recent years, artificial intelligence has been increasingly applied in the field of medical imaging. Among these applications, fundus image analysis presents special challenges, including small lesion areas in certain fundus diseases and…

计算机视觉与模式识别 · 计算机科学 2025-07-30 Peiran Gu , Teng Yao , Mengshen He , Fuhao Duan , Feiyan Liu , RenYuan Peng , Bao Ge

The encoder-decoder is the typical framework for Neural Machine Translation (NMT), and different structures have been developed for improving the translation performance. Transformer is one of the most promising structures, which can…

计算与语言 · 计算机科学 2018-12-11 Kaitao Song , Xu Tan , Furong Peng , Jianfeng Lu

The Transformer architecture has been successful across many domains, including natural language processing, computer vision and speech recognition. In keyword spotting, self-attention has primarily been used on top of convolutional or…

音频与语音处理 · 电气工程与系统科学 2022-04-11 Axel Berg , Mark O'Connor , Miguel Tairum Cruz

Previous knowledge distillation methods have shown their impressive performance on model compression tasks, however, it is hard to explain how the knowledge they transferred helps to improve the performance of the student network. In this…

计算机视觉与模式识别 · 计算机科学 2023-04-26 Ziyao Guo , Haonan Yan , Hui Li , Xiaodong Lin

Deep neural networks are increasingly applied in automated histopathology. Yet, whole-slide images (WSIs) are often acquired at gigapixel sizes, rendering them computationally infeasible to analyze entirely at high resolution. Diagnostic…

图像与视频处理 · 电气工程与系统科学 2026-02-10 Tarun G , Naman Malpani , Gugan Thoppe , Sridharan Devarajan

We developed a software pipeline for quality control (QC) of histopathology whole slide images (WSIs) that segments various regions, such as blurs of different levels, tissue regions, tissue folds, and pen marks. Given the necessity and…

图像与视频处理 · 电气工程与系统科学 2025-06-17 Abhijeet Patil , Garima Jain , Harsh Diwakar , Jay Sawant , Tripti Bameta , Swapnil Rane , Amit Sethi

Pathological captioning of Whole Slide Images (WSIs), though is essential in computer-aided pathological diagnosis, has rarely been studied due to the limitations in datasets and model training efficacy. In this paper, we propose a new…

计算机视觉与模式识别 · 计算机科学 2023-11-01 Wenkang Qin , Rui Xu , Peixiang Huang , Xiaomin Wu , Heyu Zhang , Lin Luo

Multiple Instance Learning (MIL) methods allow for gigapixel Whole-Slide Image (WSI) analysis with only slide-level annotations. Interpretability is crucial for safely deploying such algorithms in high-stakes medical domains. Traditional…

计算机视觉与模式识别 · 计算机科学 2025-01-07 Susu Sun , Leslie Tessier , Frédérique Meeuwsen , Clément Grisi , Dominique van Midden , Geert Litjens , Christian F. Baumgartner

Although multiple instance learning (MIL) methods are widely used for automatic tumor detection on whole slide images (WSI), they suffer from the extreme class imbalance within the small tumor WSIs. This occurs when the tumor comprises only…

计算机视觉与模式识别 · 计算机科学 2023-09-19 Ziyu Su , Mostafa Rezapour , Usama Sajjad , Shuo Niu , Metin Nafi Gurcan , Muhammad Khalid Khan Niazi

Deep learning for histopathology has been successfully used for disease classification, image segmentation and more. However, combining image and text modalities using current state-of-the-art (SOTA) methods has been a challenge due to the…

计算机视觉与模式识别 · 计算机科学 2024-03-18 Saurav Sengupta , Donald E. Brown

Objective: We develop a computer-aided diagnosis (CAD) system using deep learning approaches for lesion detection and classification on whole-slide images (WSIs) with breast cancer. The deep features being distinguishing in classification…

图像与视频处理 · 电气工程与系统科学 2021-08-29 Wei-Wen Hsu , Yongfang Wu , Chang Hao , Yu-Ling Hou , Xiang Gao , Yun Shao , Xueli Zhang , Tao He , Yanhong Tai

Transformer-based methods have shown impressive performance in low-level vision tasks, such as image super-resolution. However, we find that these networks can only utilize a limited spatial range of input information through attribution…

图像与视频处理 · 电气工程与系统科学 2023-03-21 Xiangyu Chen , Xintao Wang , Jiantao Zhou , Yu Qiao , Chao Dong

Constrained by the low-rank bottleneck inherent in attention mechanisms, current stereo matching transformers suffer from limited nonlinear expressivity, which renders their feature representations sensitive to challenging conditions such…

计算机视觉与模式识别 · 计算机科学 2025-08-26 Ziyang Chen , Wenting Li , Yongjun Zhang , Yabo Wu , Bingshu Wang , Yong Zhao , C. L. Philip Chen

This study, we propose a novel Q-space Guided Collaborative Attention Translation Networks (Q-CATN) for multi-shell, high-angular resolution DWI (MS-HARDI) synthesis from flexible q-space sampling, leveraging the commonly acquired…

图像与视频处理 · 电气工程与系统科学 2025-05-15 Pengli Zhu , Yingji Fu , Nanguang Chen , Anqi Qiu

Histo-genomic multi-modal methods have recently emerged as a powerful paradigm, demonstrating significant potential for improving cancer prognosis. However, genome sequencing, unlike histopathology imaging, is still not widely accessible in…

图像与视频处理 · 电气工程与系统科学 2024-03-19 Zhikang Wang , Yumeng Zhang , Yingxue Xu , Seiya Imoto , Hao Chen , Jiangning Song