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In the relentless efforts in enhancing medical diagnostics, the integration of state-of-the-art machine learning methodologies has emerged as a promising research area. In molecular biology, there has been an explosion of data generated…

机器学习 · 计算机科学 2024-05-17 Ibrahim Al-Hurani , Abedalrhman Alkhateeb , Salama Ikki

Widely used deep latent variable models (DLVMs), in particular Variational Autoencoders (VAEs), employ overly simplistic priors on the latent space. To achieve strong clustering performance, existing methods that replace the standard normal…

机器学习 · 计算机科学 2025-03-12 Andrew A. Stirn , David A. Knowles

Cancer is a primary cause of human death, but discovering drugs and tailoring cancer therapies are expensive and time-consuming. We seek to facilitate the discovery of new drugs and treatment strategies for cancer using variational…

机器学习 · 计算机科学 2021-04-16 Hongyuan Dong , Jiaqing Xie , Zhi Jing , Dexin Ren

It remains a challenging task to generate a vast variety of novel compounds with desirable pharmacological properties. In this work, a generative network complex (GNC) is proposed as a new platform for designing novel compounds, predicting…

生物大分子 · 定量生物学 2019-11-01 Christopher Grow , Kaifu Gao , Duc Duy Nguyen , Guo-Wei Wei

Recent advances in deep learning have shown their ability to learn strong feature representations for images. The task of image clustering naturally requires good feature representations to capture the distribution of the data and…

计算机视觉与模式识别 · 计算机科学 2020-05-12 Vignesh Prasad , Dipanjan Das , Brojeshwar Bhowmick

In data-driven drug discovery, designing molecular descriptors is a very important task. Deep generative models such as variational autoencoders (VAEs) offer a potential solution by designing descriptors as probabilistic latent vectors…

机器学习 · 计算机科学 2023-08-23 Daiki Koge , Naoaki Ono , Shigehiko Kanaya

With the recent advances in machine learning for quantum chemistry, it is now possible to predict the chemical properties of compounds and to generate novel molecules. Existing generative models mostly use a string- or graph-based…

生物大分子 · 定量生物学 2020-10-14 Vitali Nesterov , Mario Wieser , Volker Roth

Dose-response prediction in cancer is an active application field in machine learning. Using large libraries of \textit{in-vitro} drug sensitivity screens, the goal is to develop accurate predictive models that can be used to guide…

定量方法 · 定量生物学 2024-07-02 Leiv Rønneberg , Vidhi Lalchand , Paul D. W. Kirk

The growing demand for molecules with tailored properties in fields such as drug discovery and chemical engineering has driven advancements in computational methods for molecular design. Machine learning-based approaches for de-novo…

机器学习 · 计算机科学 2025-04-29 Nandan Joshi , Erhan Guven

While GAN is a powerful model for generating images, its inability to infer a latent space directly limits its use in applications requiring an encoder. Our paper presents a simple architectural setup that combines the generative…

机器学习 · 计算机科学 2020-12-09 Yuri Feigin , Hedva Spitzer , Raja Giryes

We propose a novel deep clustering method that integrates Variational Autoencoders (VAEs) into the Expectation-Maximization (EM) framework. Our approach models the probability distribution of each cluster with a VAE and alternates between…

机器学习 · 计算机科学 2025-01-14 Michael Adipoetra , Ségolène Martin

Accurately predicting counterfactual user feedback is essential for building effective recommender systems. However, latent confounding bias can obscure the true causal relationship between user feedback and item exposure, ultimately…

信息检索 · 计算机科学 2025-05-23 Jianfeng Deng , Qingfeng Chen , Debo Cheng , Jiuyong Li , Lin Liu , Shichao Zhang

Traditional drug discovery programs are being transformed by the advent of machine learning methods. Among these, Generative AI methods (GM) have gained attention due to their ability to design new molecules and enhance specific properties…

We propose a topic-guided variational autoencoder (TGVAE) model for text generation. Distinct from existing variational autoencoder (VAE) based approaches, which assume a simple Gaussian prior for the latent code, our model specifies the…

计算与语言 · 计算机科学 2019-03-19 Wenlin Wang , Zhe Gan , Hongteng Xu , Ruiyi Zhang , Guoyin Wang , Dinghan Shen , Changyou Chen , Lawrence Carin

The rising use of machine learning in various fields requires robust methods to create synthetic tabular data. Data should preserve key characteristics while addressing data scarcity challenges. Current approaches based on Generative…

机器学习 · 计算机科学 2024-11-15 Patricia A. Apellániz , Juan Parras , Santiago Zazo

Clustering algorithms have wide applications and play an important role in data analysis fields including time series data analysis. However, in time series analysis, most of the algorithms used signal shape features or the initial value of…

机器学习 · 统计学 2020-04-30 Daisuke Kaji , Kazuho Watanabe , Masahiro Kobayashi

Lung cancer is responsible for 21% of cancer deaths in the UK and five-year survival rates are heavily influenced by the stage the cancer was identified at. Recent studies have demonstrated the capability of AI methods for accurate and…

计算机视觉与模式识别 · 计算机科学 2023-11-28 Benjamin Keel , Aaron Quyn , David Jayne , Samuel D. Relton

Variational autoencoders (VAEs) and generative adversarial networks (GANs) enjoy an intuitive connection to manifold learning: in training the decoder/generator is optimized to approximate a homeomorphism between the data distribution and…

机器学习 · 计算机科学 2020-08-28 Henry Li , Ofir Lindenbaum , Xiuyuan Cheng , Alexander Cloninger

Computing atomic-scale properties of chemically disordered materials requires an efficient exploration of their vast configuration space. Traditional approaches such as Monte Carlo or Special Quasirandom Structures either entail sampling an…

材料科学 · 物理学 2026-03-17 Maciej J. Karcz , Luca Messina , Eiji Kawasaki , Emeric Bourasseau

In recent years, deep generative models have been successfully adopted for various molecular design tasks, particularly in the life and material sciences. A critical challenge for pre-trained generative molecular design (GMD) models is to…

机器学习 · 计算机科学 2024-06-03 A N M Nafiz Abeer , Sanket Jantre , Nathan M Urban , Byung-Jun Yoon
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