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Training Generative Adversarial Networks (GANs) remains a challenging problem. The discriminator trains the generator by learning the distribution of real/generated data. However, the distribution of generated data changes throughout the…

计算机视觉与模式识别 · 计算机科学 2024-01-05 Wentian Zhang , Haozhe Liu , Bing Li , Jinheng Xie , Yawen Huang , Yuexiang Li , Yefeng Zheng , Bernard Ghanem

When recording the movement of individual animals, cells or molecules one will often observe changes in their diffusive behaviour at certain points in time along their trajectory. In order to capture the different diffusive modes assembled…

统计力学 · 物理学 2024-10-21 Henrik Seckler , Ralf Metzler

Over the past years, Generative Adversarial Networks (GANs) have shown a remarkable generation performance especially in image synthesis. Unfortunately, they are also known for having an unstable training process and might loose parts of…

机器学习 · 计算机科学 2019-11-18 Teodora Pandeva , Matthias Schubert

Generative models have the potential to accelerate key steps in the discovery of novel molecular therapeutics and materials. Diffusion models have recently emerged as a powerful approach, excelling at unconditional sample generation and,…

生物大分子 · 定量生物学 2024-07-17 Leo Klarner , Tim G. J. Rudner , Garrett M. Morris , Charlotte M. Deane , Yee Whye Teh

Motivation: Despite its great success in various physical modeling, differential geometry (DG) has rarely been devised as a versatile tool for analyzing large, diverse and complex molecular and biomolecular datasets due to the limited…

定量方法 · 定量生物学 2018-06-12 Duc Duy Nguyen , Guo-Wei Wei

Due to the ease of training, ability to scale, and high sample quality, diffusion models (DMs) have become the preferred option for generative modeling, with numerous pre-trained models available for a wide variety of datasets. Containing…

机器学习 · 计算机科学 2024-01-17 Weijian Luo , Tianyang Hu , Shifeng Zhang , Jiacheng Sun , Zhenguo Li , Zhihua Zhang

Molecular generation and molecular property prediction are both crucial for drug discovery, but they are often developed independently. Inspired by recent studies, which demonstrate that diffusion model, a prominent generative approach, can…

机器学习 · 计算机科学 2025-04-07 Shikun Feng , Yuyan Ni , Yan Lu , Zhi-Ming Ma , Wei-Ying Ma , Yanyan Lan

In this study, an efficient deep-learning model is developed to predict unavailable parameters, e.g., streamwise velocity, temperature, and pressure from available velocity components. This model, termed mapping generative adversarial…

We present that, instead of establishing the equations of motion, one can model-freely reveal the dynamical properties of a black-box system using a learning machine. Trained only by a segment of time series of a state variable recorded at…

机器学习 · 计算机科学 2022-04-15 Hong Zhao

The quest for efficient and robust deep learning models for molecular systems representation is increasingly critical in scientific exploration. The advent of message passing neural networks has marked a transformative era in graph-based…

计算物理 · 物理学 2026-01-05 Jian Chang , Shuze Zhu

Molecular dynamics (MD) simulation is a powerful tool for studying biomolecular structural changes, molecular recognition, transmembrane transport, and functional mechanisms. However, its practical bottleneck lies not only in software…

定量方法 · 定量生物学 2026-04-22 Zhenyu Ma , Chunyi Yang , Yuyang Song , Jingyi Zhu , Letian Yang , Limei Xu , Min Xiao , Xukai Jiang

Phase segregation, the process by which the components of a binary mixture spontaneously separate, is a key process in the evolution and design of many chemical, mechanical, and biological systems. In this work, we present a data-driven…

机器学习 · 计算机科学 2018-03-28 Amir Barati Farimani , Joseph Gomes , Rishi Sharma , Franklin L. Lee , Vijay S. Pande

This paper presents a novel deep learning based data-driven optimization method. A novel generative adversarial network (GAN) based data-driven distributionally robust chance constrained programming framework is proposed. GAN is applied to…

最优化与控制 · 数学 2020-05-12 Shipu Zhao , Fengqi You

Physics-informed deep learning has been developed as a novel paradigm for learning physical dynamics recently. While general physics-informed deep learning methods have shown early promise in learning fluid dynamics, they are difficult to…

流体动力学 · 物理学 2024-06-07 Jing Qiu , Jiancheng Huang , Xiangdong Zhang , Zeng Lin , Minglei Pan , Zengding Liu , Fen Miao

Diffusion distillation is a widely used technique to reduce the sampling cost of diffusion models, yet it often requires extensive training, and the student performance tends to be degraded. Recent studies show that incorporating a GAN…

机器学习 · 计算机科学 2025-06-12 Bowen Zheng , Tianming Yang

The task of deducing three-dimensional molecular configurations from their two-dimensional graph representations holds paramount importance in the fields of computational chemistry and pharmaceutical development. The rapid advancement of…

生物大分子 · 定量生物学 2025-01-09 Bobin Yang , Jie Deng , Zhenghan Chen , Ruoxue Wu

The classical method of determining the atomic structure of complex molecules by analyzing diffraction patterns is currently undergoing drastic developments. Modern techniques for producing extremely bright and coherent X-ray lasers allow a…

生物大分子 · 定量生物学 2015-10-12 Tomas Ekeberg , Stefan Engblom , Jing Liu

We establish a time-stepping learning algorithm and apply it to predict the solution of the partial differential equation of motion in micromagnetism as a dynamical system depending on the external field as parameter. The data-driven…

计算物理 · 物理学 2021-02-02 Lukas Exl , Norbert J. Mauser , Thomas Schrefl , Dieter Suess

Simulating the dynamics of ions near polarizable nanoparticles (NPs) using coarse-grained models is extremely challenging due to the need to solve the Poisson equation at every simulation timestep. Recently, a molecular dynamics (MD) method…

计算物理 · 物理学 2019-11-01 JCS Kadupitiya , Geoffrey C. Fox , Vikram Jadhao

An active learning procedure called Deep Potential Generator (DP-GEN) is proposed for the construction of accurate and transferable machine learning-based models of the potential energy surface (PES) for the molecular modeling of materials.…

计算物理 · 物理学 2019-03-06 Linfeng Zhang , De-Ye Lin , Han Wang , Roberto Car , Weinan E