相关论文: Deeper Clinical Document Understanding Using Relat…
Text mining and information extraction for the medical domain has focused on scientific text generated by researchers. However, their direct access to individual patient experiences or patient-doctor interactions can be limited. Information…
Document-level relation extraction aims to categorize the association between any two entities within a document. We find that previous methods for document-level relation extraction are ineffective in exploiting the full potential of large…
This paper describes about information extraction system, which is an extension of the system developed by team Hitachi for "Disease/Disorder Template filling" task organized by ShARe/CLEF eHealth Evolution Lab 2014. In this extension…
The extraction and analysis of insights from medical data, primarily stored in free-text formats by healthcare workers, presents significant challenges due to its unstructured nature. Medical coding, a crucial process in healthcare, remains…
Relation extraction (RE) aims at extracting the relation between two entities from the text corpora. It is a crucial task for Knowledge Graph (KG) construction. Most existing methods predict the relation between an entity pair by learning…
End-to-end relation extraction (E2ERE) is an important task in information extraction, more so for biomedicine as scientific literature continues to grow exponentially. E2ERE typically involves identifying entities (or named entity…
Joint named entity recognition (NER) and relation extraction (RE) is a fundamental task in natural language processing for constructing knowledge graphs from unstructured text. While recent approaches treat NER and RE as separate tasks…
Clinical concept extraction often begins with clinical Named Entity Recognition (NER). Often trained on annotated clinical notes, clinical NER models tend to struggle with tagging clinical entities in user queries because of the structural…
Extracting relations from scientific literature is a fundamental task in biomedical NLP because entities and relations among them drive hypothesis generation and knowledge discovery. As literature grows rapidly, relation extraction (RE) is…
Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…
State-of-the-art models for relation extraction (RE) in the biomedical domain consider finetuning BioBERT using classification, but they may suffer from the anisotropy problem. Contrastive learning methods can reduce this anisotropy…
Attention-based models have become the leading approach in modeling medical language for Natural Language Processing (NLP) in clinical notes. These models outperform traditional techniques by effectively capturing contextual representations…
Document-level Relation Extraction (DocRE) involves identifying relations between entities across multiple sentences in a document. Evidence sentences, crucial for precise entity pair relationships identification, enhance focus on essential…
Causal relation extraction of biomedical entities is one of the most complex tasks in biomedical text mining, which involves two kinds of information: entity relations and entity functions. One feasible approach is to take relation…
Extracting fine-grained experimental findings from literature can provide dramatic utility for scientific applications. Prior work has developed annotation schemas and datasets for limited aspects of this problem, failing to capture the…
This paper presents our participation in the AGAC Track from the 2019 BioNLP Open Shared Tasks. We provide a solution for Task 3, which aims to extract "gene - function change - disease" triples, where "gene" and "disease" are mentions of…
Relation extraction (RE) is a crucial task in natural language processing (NLP) that aims to identify and classify relationships between entities mentioned in text. In the financial domain, relation extraction plays a vital role in…
Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…
Document-level relation extraction (DocRE) aims to extract semantic relations among entity pairs in a document. Typical DocRE methods blindly take the full document as input, while a subset of the sentences in the document, noted as the…
Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical…