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Dimensionality reduction is often used as an initial step in data exploration, either as preprocessing for classification or regression or for visualization. Most dimensionality reduction techniques to date are unsupervised; they do not…

机器学习 · 统计学 2020-06-17 Jake S. Rhodes , Adele Cutler , Guy Wolf , Kevin R. Moon

Visualization methods based on the nearest neighbor graph, such as t-SNE or UMAP, are widely used for visualizing high-dimensional data. Yet, these approaches only produce meaningful results if the nearest neighbors themselves are…

机器学习 · 计算机科学 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

Conditional t-SNE (ct-SNE) is a recent extension to t-SNE that allows removal of known cluster information from the embedding, to obtain a visualization revealing structure beyond label information. This is useful, for example, when one…

机器学习 · 计算机科学 2023-04-12 Edith Heiter , Bo Kang , Ruth Seurinck , Jefrey Lijffijt

Molecular simulation trajectories represent high-dimensional data. Such data can be visualized by methods of dimensionality reduction. Non-linear dimensionality reduction methods are likely to be more efficient than linear ones due to the…

化学物理 · 物理学 2020-08-24 Vojtěch Spiwok , Pavel Kříž

The t-distributed Stochastic Neighbor Embedding (t-SNE) is a powerful and popular method for visualizing high-dimensional data. It minimizes the Kullback-Leibler (KL) divergence between the original and embedded data distributions. In this…

机器学习 · 计算机科学 2018-11-06 Daniel Jiwoong Im , Nakul Verma , Kristin Branson

Stochastic Neighbor Embedding (SNE) methods minimize the divergence between the similarity matrix of a high-dimensional data set and its counterpart from a low-dimensional embedding, leading to widely applied tools for data visualization.…

机器学习 · 计算机科学 2018-09-13 Yao Lu , Jukka Corander , Zhirong Yang

Hyperspectral Imagery (and Remote Sensing in general) captured from UAVs or satellites are highly voluminous in nature due to the large spatial extent and wavelengths captured by them. Since analyzing these images requires a huge amount of…

图像与视频处理 · 电气工程与系统科学 2020-05-12 Megh Shukla , Biplab Banerjee , Krishna Mohan Buddhiraju

We introduce "TriMap"; a dimensionality reduction technique based on triplet constraints, which preserves the global structure of the data better than the other commonly used methods such as t-SNE, LargeVis, and UMAP. To quantify the global…

机器学习 · 计算机科学 2022-03-29 Ehsan Amid , Manfred K. Warmuth

Due to the sequential sample arrival, changing experiment conditions, and evolution of knowledge, the demand to continually visualize evolving structures of sequential and diverse single-cell RNA-sequencing (scRNA-seq) data becomes…

基因组学 · 定量生物学 2024-06-24 Hui Ma , Kai Chen

Dimension reduction and data visualization aim to project a high-dimensional dataset to a low-dimensional space while capturing the intrinsic structures in the data. It is an indispensable part of modern data science, and many dimensional…

机器学习 · 统计学 2022-10-26 Rong Ma , Eric D. Sun , James Zou

t-distributed Stochastic Neighborhood Embedding (t-SNE), a clustering and visualization method proposed by van der Maaten & Hinton in 2008, has rapidly become a standard tool in a number of natural sciences. Despite its overwhelming…

机器学习 · 计算机科学 2017-06-09 George C. Linderman , Stefan Steinerberger

This article presents a novel application of the t-distributed Stochastic Neighbor Embedding (t-SNE) clustering algorithm to the telecommunication field. t-SNE is a dimensionality reduction (DR) algorithm that allows the visualization of…

信号处理 · 电气工程与系统科学 2023-04-28 Alejandro Ramírez-Arroyo , Luz García , Antonio Alex-Amor , Juan F. Valenzuela-Valdés

Feature representation is an important aspect of remote-sensing based image classification. While deep convolutional neural networks are able to effectively amalgamate information, large numbers of parameters often make learned features…

机器学习 · 计算机科学 2022-03-07 Joshua Peeples , Sarah Walker , Connor McCurley , Alina Zare , James Keller , Weihuang Xu

Data visualisation is a key tool in data mining for understanding big datasets. Many visualisation methods have been proposed, including the well-regarded state-of-the-art method t-Distributed Stochastic Neighbour Embedding. However, the…

神经与进化计算 · 计算机科学 2020-01-29 Andrew Lensen , Bing Xue , Mengjie Zhang

Hierarchical clustering is an effective, interpretable method for analyzing structure in data. It reveals insights at multiple scales without requiring a predefined number of clusters and captures nested patterns and subtle relationships,…

This work is concerned with the continuum limit of a graph-based data visualization technique called the t-Distributed Stochastic Neighbor Embedding (t-SNE), which is widely used for visualizing data in a variety of applications, but is…

机器学习 · 统计学 2026-04-15 Jeff Calder , Zhonggan Huang , Ryan Murray , Adam Pickarski

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

机器学习 · 统计学 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

The chemical sciences are producing an unprecedented amount of large, high-dimensional data sets containing chemical structures and associated properties. However, there are currently no algorithms to visualize such data while preserving…

人机交互 · 计算机科学 2020-01-07 Daniel Probst , Jean-Louis Reymond

There has been an intense recent activity in embedding of very high dimensional and nonlinear data structures, much of it in the data science and machine learning literature. We survey this activity in four parts. In the first part we cover…

机器学习 · 统计学 2022-09-01 Dag Tjøstheim , Martin Jullum , Anders Løland

Hyperbolic space can naturally embed hierarchies that often exist in real-world data and semantics. While high-dimensional hyperbolic embeddings lead to better representations, most hyperbolic models utilize low-dimensional embeddings, due…

机器学习 · 计算机科学 2022-05-17 Yunhui Guo , Haoran Guo , Stella Yu