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We propose a novel and easy-to-implement joint location-scale association testing procedure that can account for complex genetic architecture without explicitly modeling interaction effects, and is suitable for large-scale whole-genome…

统计方法学 · 统计学 2014-11-14 David Soave , Andrew Paterson , Lisa Strug , Lei Sun

Protein-protein interaction (PPI) prediction plays a pivotal role in deciphering cellular functions and disease mechanisms. To address the limitations of traditional experimental methods and existing computational approaches in cross-modal…

机器学习 · 计算机科学 2025-04-29 Shengrui XU , Tianchi Lu , Zikun Wang , Jixiu Zhai

Reconfigurable intelligent surface (RIS) provides a promising way to build the programmable wireless transmission environments in the future. Owing to the large number of reflecting elements used at the RIS, joint optimization for the…

信息论 · 计算机科学 2021-01-11 Xiaoyan Ma , Shuaishuai Guo , Haixia Zhang , Yuguang Fang , Dongfeng Yuan

We provide a visualization model that targets the visualization of Protein-Protein Interactions(PPI) and combines it with a super view based on publications and methods to extract interactions. Although there are several existing tools, our…

信息检索 · 计算机科学 2021-11-29 Melih Sozdinler

Multimodal visual information fusion aims to integrate the multi-sensor data into a single image which contains more complementary information and less redundant features. However the complementary information is hard to extract, especially…

计算机视觉与模式识别 · 计算机科学 2024-06-18 Hui Li , Xiao-Jun Wu

As programming education becomes more widespread, many college students from non-computer science backgrounds begin learning programming. Collaborative programming emerges as an effective method for instructors to support novice students in…

人机交互 · 计算机科学 2025-02-26 Gefei Zhang , Shenming Ji , Yicao Li , Jingwei Tang , Jihong Ding , Meng Xia , Guodao Sun , Ronghua Liang

Emerging large-scale engineering systems rely on distributed fusion for situational awareness, where agents combine noisy local sensor measurements with exchanged information to obtain fused estimates. However, at the sheer scale of these…

系统与控制 · 电气工程与系统科学 2026-03-18 Leonardo Pedroso , Pedro Batista , W. P. M. H. Heemels

Computational protein-protein interaction (PPI) prediction techniques can contribute greatly in reducing time, cost and false-positive interactions compared to experimental approaches. Sequence is one of the key and primary information of…

机器学习 · 计算机科学 2022-03-29 Soumyadeep Debnath , Ayatullah Faruk Mollah

To date, testing interactions in high dimensions has been a challenging task. Existing methods often have issues with sensitivity to modeling assumptions and heavily asymptotic nominal p-values. To help alleviate these issues, we propose a…

机器学习 · 统计学 2012-06-29 Noah Simon , Robert Tibshirani

Reliably distinguishing between cells based on minute differences in receptor density is crucial for cell-cell or virus-cell recognition, the initiation of signal transduction and selective targeting in directed drug delivery. Such sharp…

软凝聚态物质 · 物理学 2021-10-04 Christine Linne , Daniele Visco , Stefano Angioletti-Uberti , Liedewij Laan , Daniela J. Kraft

Recent unsupervised contrastive representation learning follows a Single Instance Multi-view (SIM) paradigm where positive pairs are usually constructed with intra-image data augmentation. In this paper, we propose an effective approach…

计算机视觉与模式识别 · 计算机科学 2022-10-11 Xiangxiang Chu , Xiaohang Zhan , Bo Zhang

Whole Slide Images (WSIs) are critical for various clinical applications, including histopathological analysis. However, current deep learning approaches in this field predominantly focus on individual tumor types, limiting model…

图像与视频处理 · 电气工程与系统科学 2024-09-18 Sharon Peled , Yosef E. Maruvka , Moti Freiman

Screening traditionally refers to the problem of detecting active inputs in the computer model. In this paper, we develop methodology that applies to screening, but the main focus is on detecting active inputs not in the computer model…

统计计算 · 统计学 2024-02-20 Pierre Barbillon , Anabel Forte , Rui Paulo

Reconstructing the structural connectivity between interacting units from observed activity is a challenge across many different disciplines. The fundamental first step is to establish whether or to what extent the interactions between the…

神经元与认知 · 定量生物学 2016-11-02 Elliot A. Martin , Jaroslav Hlinka , Jörn Davidsen

Tactile sensing plays an important role in robotic perception and manipulation tasks. To overcome the real-world limitations of data collection, simulating tactile response in a virtual environment comes as a desirable direction of robotic…

机器人学 · 计算机科学 2021-08-21 Yikai Wang , Wenbing Huang , Bin Fang , Fuchun Sun , Chang Li

Survival prediction, utilizing pathological images and genomic profiles, is increasingly important in cancer analysis and prognosis. Despite significant progress, precise survival analysis still faces two main challenges: (1) The massive…

图像与视频处理 · 电气工程与系统科学 2024-06-26 Songhan Jiang , Zhengyu Gan , Linghan Cai , Yifeng Wang , Yongbing Zhang

We present the formulation and implementation of the Integral-Screened Configuration-Interaction method (ISCI). The ISCI is a minimal-operational count integral-driven direct Configuration-Interaction (CI) method with a simple and rigorous…

化学物理 · 物理学 2016-09-27 Lasse Kragh Sørensen , Sebastian Bauch , Lars Bojer Madsen

Genome-wide epistasis analysis is a powerful tool to infer gene interactions, which can guide drug and vaccine development and lead to a deeper understanding of microbial pathogenesis. We have considered all complete SARS-CoV-2 genomes…

定量方法 · 定量生物学 2022-05-18 Hong-Li Zeng , Vito Dichio , Edwin Rodríguez Horta , Kaisa Thorell , Erik Aurell

Pairwise interactions between perturbations to a system can provide evidence for the causal dependencies of the underlying underlying mechanisms of a system. When observations are low dimensional, hand crafted measurements, detecting…

机器学习 · 计算机科学 2024-09-13 Zuheng , Xu , Moksh Jain , Ali Denton , Shawn Whitfield , Aniket Didolkar , Berton Earnshaw , Jason Hartford

Deep learning methods such as convolutional neural networks (CNNs) are difficult to directly utilize to analyze whole slide images (WSIs) due to the large image dimensions. We overcome this limitation by proposing a novel two-stage…

图像与视频处理 · 电气工程与系统科学 2021-06-15 Shivam Kalra , Mohammed Adnan , Sobhan Hemati , Taher Dehkharghanian , Shahryar Rahnamayan , Hamid Tizhoosh