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Relation extraction (RE) plays an important role in extracting knowledge from unstructured text but requires a large amount of labeled corpus. To reduce the expensive annotation efforts, semisupervised learning aims to leverage both labeled…

计算与语言 · 计算机科学 2021-03-16 Yusen Lin

In this work, we used a semi-supervised learning method to train deep learning model that can segment the brain MRI images. The semi-supervised model uses less labeled data, and the performance is competitive with the supervised model with…

图像与视频处理 · 电气工程与系统科学 2022-12-07 Hedong Zhang , Anand A. Joshi

Clinical notes in electronic health records contain highly heterogeneous writing styles, including non-standard terminology or abbreviations. Using these notes in predictive modeling has traditionally required preprocessing (e.g. taking…

机器学习 · 计算机科学 2019-11-18 Jonas Kemp , Alvin Rajkomar , Andrew M. Dai

This paper addresses the problem of extracting keyphrases from scientific articles and categorizing them as corresponding to a task, process, or material. We cast the problem as sequence tagging and introduce semi-supervised methods to a…

计算与语言 · 计算机科学 2017-08-22 Yi Luan , Mari Ostendorf , Hannaneh Hajishirzi

Drug combination therapy is a well-established strategy for disease treatment with better effectiveness and less safety degradation. However, identifying novel drug combinations through wet-lab experiments is resource intensive due to the…

机器学习 · 计算机科学 2023-01-18 Zhihang Hu , Qinze Yu , Yucheng Guo , Taifeng Wang , Irwin King , Xin Gao , Le Song , Yu Li

Deep learning (DL) has shown promise for faster, high quality accelerated MRI reconstruction. However, supervised DL methods depend on extensive amounts of fully-sampled (labeled) data and are sensitive to out-of-distribution (OOD) shifts,…

Recent years have seen rapid development in Information Extraction, as well as its subtask, Relation Extraction. Relation Extraction is able to detect semantic relations between entities in sentences. Currently, many efficient approaches…

计算与语言 · 计算机科学 2024-03-19 Zhuang Li

Access to real-world medication prescriptions is essential for medical research and healthcare quality improvement. However, access to real medication prescriptions is often limited due to the sensitive nature of the information expressed.…

计算与语言 · 计算机科学 2023-11-21 Samuel Belkadi , Nicolo Micheletti , Lifeng Han , Warren Del-Pinto , Goran Nenadic

The goal of semi-supervised learning is to utilize the unlabeled, in-domain dataset U to improve models trained on the labeled dataset D. Under the context of large-scale language-model (LM) pretraining, how we can make the best use of U is…

计算与语言 · 计算机科学 2020-11-20 Zijun Sun , Chun Fan , Xiaofei Sun , Yuxian Meng , Fei Wu , Jiwei Li

We tackle biomedical image segmentation in the scenario of only a few labeled brain MR images. This is an important and challenging task in medical applications, where manual annotations are time-consuming. Current multi-atlas based…

计算机视觉与模式识别 · 计算机科学 2020-01-14 Hyeon Woo Lee , Mert R. Sabuncu , Adrian V. Dalca

Graph Neural Networks (GNNs) have gained traction in the complex domain of drug discovery because of their ability to process graph-structured data such as drug molecule models. This approach has resulted in a myriad of methods and models…

机器学习 · 计算机科学 2025-09-10 Katherine Berry , Liang Cheng

Massively multitask neural architectures provide a learning framework for drug discovery that synthesizes information from many distinct biological sources. To train these architectures at scale, we gather large amounts of data from public…

Generalising deep models to new data from new centres (termed here domains) remains a challenge. This is largely attributed to shifts in data statistics (domain shifts) between source and unseen domains. Recently, gradient-based…

计算机视觉与模式识别 · 计算机科学 2021-10-05 Xiao Liu , Spyridon Thermos , Alison O'Neil , Sotirios A. Tsaftaris

Within the intensive care unit (ICU), a wealth of patient data, including clinical measurements and clinical notes, is readily available. This data is a valuable resource for comprehending patient health and informing medical decisions, but…

机器学习 · 计算机科学 2023-12-13 Ryan King , Tianbao Yang , Bobak Mortazavi

The text of clinical notes can be a valuable source of patient information and clinical assessments. Historically, the primary approach for exploiting clinical notes has been information extraction: linking spans of text to concepts in a…

计算与语言 · 计算机科学 2019-06-11 Sarah Wiegreffe , Edward Choi , Sherry Yan , Jimeng Sun , Jacob Eisenstein

Previous studies dominantly target at self-supervised learning on real-valued networks and have achieved many promising results. However, on the more challenging binary neural networks (BNNs), this task has not yet been fully explored in…

计算机视觉与模式识别 · 计算机科学 2021-06-22 Zhiqiang Shen , Zechun Liu , Jie Qin , Lei Huang , Kwang-Ting Cheng , Marios Savvides

Recent advancements in medical entity linking have been applied in the area of scientific literature and social media data. However, with the adoption of telemedicine and conversational agents such as Alexa in healthcare settings, medical…

计算与语言 · 计算机科学 2020-10-13 Shaoqing Yuan , Parminder Bhatia , Busra Celikkaya , Haiyang Liu , Kyunghwan Choi

Machine learning has revolutionized the modeling of clinical timeseries data. Using machine learning, a Deep Neural Network (DNN) can be automatically trained to learn a complex mapping of its input features for a desired task. This is…

机器学习 · 计算机科学 2024-10-15 Ryan King , Shivesh Kodali , Conrad Krueger , Tianbao Yang , Bobak J. Mortazavi

The use of large pretrained neural networks to create contextualized word embeddings has drastically improved performance on several natural language processing (NLP) tasks. These computationally expensive models have begun to be applied to…

计算机与社会 · 计算机科学 2019-12-03 Benjamin Clavié , Kobi Gal

The scarcity of high-quality annotated medical imaging datasets is a major problem that collides with machine learning applications in the field of medical imaging analysis and impedes its advancement. Self-supervised learning is a recent…

图像与视频处理 · 电气工程与系统科学 2022-07-21 Saeed Shurrab , Rehab Duwairi