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Scikit-learn is a Python module integrating a wide range of state-of-the-art machine learning algorithms for medium-scale supervised and unsupervised problems. This package focuses on bringing machine learning to non-specialists using a…

Molecular dynamics (MD) simulations provide atomistic insights into the structure, dynamics, and function of biomolecules by generating time-resolved, high-dimensional trajectories. Analyzing such data benefits from estimating the minimal…

生物大分子 · 定量生物学 2026-03-02 Irene Cazzaniga , Toni Giorgino

This article illustrates intRinsic, an R package that implements novel state-of-the-art likelihood-based estimators of the intrinsic dimension of a dataset, an essential quantity for most dimensionality reduction techniques. In order to…

统计计算 · 统计学 2023-02-24 Francesco Denti

The Intrinsic Dimension (ID) is a key concept in unsupervised learning and feature selection, as it is a lower bound to the number of variables which are necessary to describe a system. However, in almost any real-world dataset the ID…

机器学习 · 统计学 2026-04-02 Antonio Di Noia , Iuri Macocco , Aldo Glielmo , Alessandro Laio , Antonietta Mira

Real world-datasets characterized by discrete features are ubiquitous: from categorical surveys to clinical questionnaires, from unweighted networks to DNA sequences. Nevertheless, the most common unsupervised dimensional reduction methods…

机器学习 · 统计学 2023-03-14 Iuri Macocco , Aldo Glielmo , Jacopo Grilli , Alessandro Laio

The direpack package aims to establish a set of modern statistical dimension reduction techniques into the Python universe as a single, consistent package. The dimension reduction methods included resort into three categories: projection…

统计计算 · 统计学 2020-06-03 Emmanuel Jordy Menvouta , Sven Serneels , Tim Verdonck

The concept of dimension is essential to grasp the complexity of data. A naive approach to determine the dimension of a dataset is based on the number of attributes. More sophisticated methods derive a notion of intrinsic dimension (ID)…

机器学习 · 计算机科学 2023-04-18 Maximilian Stubbemann , Tom Hanika , Friedrich Martin Schneider

The library scikit-fda is a Python package for Functional Data Analysis (FDA). It provides a comprehensive set of tools for representation, preprocessing, and exploratory analysis of functional data. The library is built upon and integrated…

Discovering patterns of the complex high-dimensional data is a long-standing problem. Dimension Reduction (DR) and Intrinsic Dimension Estimation (IDE) are two fundamental thematic programs that facilitate geometric understanding of the…

机器学习 · 统计学 2022-09-13 Kisung You

High-dimensional data are ubiquitous in contemporary science and finding methods to compress them is one of the primary goals of machine learning. Given a dataset lying in a high-dimensional space (in principle hundreds to several thousands…

机器学习 · 计算机科学 2020-03-24 Vittorio Erba , Marco Gherardi , Pietro Rotondo

Analyzing large volumes of high-dimensional data is an issue of fundamental importance in data science, molecular simulations and beyond. Several approaches work on the assumption that the important content of a dataset belongs to a…

机器学习 · 统计学 2018-03-20 Elena Facco , Maria d'Errico , Alex Rodriguez , Alessandro Laio

Accurate estimation of Intrinsic Dimensionality (ID) is of crucial importance in many data mining and machine learning tasks, including dimensionality reduction, outlier detection, similarity search and subspace clustering. However, since…

This paper introduces scikit-hubness, a Python package for efficient nearest neighbor search in high-dimensional spaces. Hubness is an aspect of the curse of dimensionality, and is known to impair various learning tasks, including…

机器学习 · 计算机科学 2021-01-12 Roman Feldbauer , Thomas Rattei , Arthur Flexer

scikit-image is an image processing library that implements algorithms and utilities for use in research, education and industry applications. It is released under the liberal "Modified BSD" open source license, provides a well-documented…

We present spd-metrics-id, a Python package for computing distances and divergences between symmetric positive-definite (SPD) matrices. Unlike traditional toolkits that focus on specific applications, spd-metrics-id provides a unified,…

统计计算 · 统计学 2025-10-07 Kaosar Uddin

Estimating the intrinsic dimensionality (ID) of data is a fundamental problem in machine learning and computer vision, providing insight into the true degrees of freedom underlying high-dimensional observations. Existing methods often rely…

机器学习 · 计算机科学 2026-03-12 Eng-Jon Ong , Omer Bobrowski , Gesine Reinert , Primoz Skraba

Dimensionality is an important aspect for analyzing and understanding (high-dimensional) data. In their 2006 ICDM paper Tatti et al. answered the question for a (interpretable) dimension of binary data tables by introducing a normalized…

机器学习 · 计算机科学 2025-04-30 Tom Hanika , Tobias Hille

Intrinsic dimensionality (ID) is one of the most fundamental characteristics of multi-dimensional data point clouds. Knowing ID is crucial to choose the appropriate machine learning approach as well as to understand its behavior and…

机器学习 · 计算机科学 2020-04-21 Jonathan Bac , Andrei Zinovyev

Automated data-driven modeling, the process of directly discovering the governing equations of a system from data, is increasingly being used across the scientific community. PySINDy is a Python package that provides tools for applying the…

Scikit-network is a Python package inspired by scikit-learn for the analysis of large graphs. Graphs are represented by their adjacency matrix in the sparse CSR format of SciPy. The package provides state-of-the-art algorithms for ranking,…

社会与信息网络 · 计算机科学 2020-09-17 Thomas Bonald , Nathan de Lara , Quentin Lutz , Bertrand Charpentier
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