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We define a representation framework for extracting spatial information from radiology reports (Rad-SpRL). We annotated a total of 2000 chest X-ray reports with 4 spatial roles corresponding to the common radiology entities. Our focus is on…

计算与语言 · 计算机科学 2019-08-14 Surabhi Datta , Yuqi Si , Laritza Rodriguez , Sonya E Shooshan , Dina Demner-Fushman , Kirk Roberts

Colorectal cancer is the fourth leading cause of cancer deaths worldwide and the second leading cause in the United States. The risk of colorectal cancer can be mitigated by the identification and removal of premalignant lesions through…

计算机视觉与模式识别 · 计算机科学 2017-11-29 Faisal Mahmood , Nicholas J. Durr

Extraction of concepts present in patient clinical records is an essential step in clinical research. The 2010 i2b2/VA Workshop on Natural Language Processing Challenges for clinical records presented concept extraction (CE) task, with aim…

计算与语言 · 计算机科学 2016-10-20 Raghavendra Chalapathy , Ehsan Zare Borzeshi , Massimo Piccardi

Histological evaluation of tissue samples is a typical approach to identify colorectal cancer metastases in the peritoneum. For immediate assessment, reliable and real-time in-vivo imaging would be required. For example, intraoperative…

计算机视觉与模式识别 · 计算机科学 2019-03-07 Nils Gessert , Lukas Wittig , Daniel Drömann , Tobias Keck , Alexander Schlaefer , David B. Ellebrecht

Purpose: The gold standard for colorectal cancer metastases detection in the peritoneum is histological evaluation of a removed tissue sample. For feedback during interventions, real-time in-vivo imaging with confocal laser microscopy has…

计算机视觉与模式识别 · 计算机科学 2019-05-28 Nils Gessert , Marcel Bengs , Lukas Wittig , Daniel Drömann , Tobias Keck , Alexander Schlaefer , David B. Ellebrecht

Communication of follow-up recommendations when abnormalities are identified on imaging studies is prone to error. In this paper, we present a natural language processing approach based on deep learning to automatically identify clinically…

计算与语言 · 计算机科学 2019-05-16 Wilson Lau , Thomas H Payne , Ozlem Uzuner , Meliha Yetisgen

Automated extraction of concepts from patient clinical records is an essential facilitator of clinical research. For this reason, the 2010 i2b2/VA Natural Language Processing Challenges for Clinical Records introduced a concept extraction…

机器学习 · 统计学 2016-11-28 Raghavendra Chalapathy , Ehsan Zare Borzeshi , Massimo Piccardi

The application of natural language processing (NLP) to cancer pathology reports has been focused on detecting cancer cases, largely ignoring precancerous cases. Improving the characterization of precancerous adenomas assists in developing…

机器学习 · 计算机科学 2022-12-13 Yizhen Zhong , Jiajie Xiao , Thomas Vetterli , Mahan Matin , Ellen Loo , Jimmy Lin , Richard Bourgon , Ofer Shapira

Colorectal cancer (CRC) ranks as the second leading cause of cancer-related deaths and the third most prevalent malignant tumour worldwide. Early detection of CRC remains problematic due to its non-specific and often embarrassing symptoms,…

机器学习 · 计算机科学 2025-04-25 Natalia Sikora , Robert L. Manschke , Alethea M. Tang , Peter Dunstan , Dean A. Harris , Su Yang

Clinical notes are an essential component of a health record. This paper evaluates how natural language processing (NLP) can be used to identify the risk of acute care use (ACU) in oncology patients, once chemotherapy starts. Risk…

计算与语言 · 计算机科学 2023-06-28 Claudio Fanconi , Marieke van Buchem , Tina Hernandez-Boussard

Colorectal cancer (CRC) is a leading worldwide cause of cancer-related mortality, and the role of prompt precise detection is of paramount interest in improving patient outcomes. Conventional diagnostic methods such as colonoscopy and…

图像与视频处理 · 电气工程与系统科学 2025-10-29 Ovi Sarkar , Md Shafiuzzaman , Md. Faysal Ahamed , Golam Mahmud , Muhammad E. H. Chowdhury

Colonoscopy screening effectively identifies and removes polyps before they progress to colorectal cancer (CRC), but current follow-up guidelines rely primarily on histopathological features, overlooking other important CRC risk factors.…

计算机视觉与模式识别 · 计算机科学 2025-04-15 Shuai Jiang , Christina Robinson , Joseph Anderson , William Hisey , Lynn Butterly , Arief Suriawinata , Saeed Hassanpour

Background: Manual extraction of pancreatic cystic lesion (PCL) features from radiology reports is labor-intensive, limiting large-scale studies needed to advance PCL research. Purpose: To develop and evaluate large language models (LLMs)…

Colonic polyps are well-recognized precursors to colorectal cancer (CRC), typically detected during colonoscopy. However, the variability in appearance, location, and size of these polyps complicates their detection and removal, leading to…

Colorectal cancer is a deadly disease that has become increasingly prevalent in recent years. Early detection is crucial for saving lives, but traditional diagnostic methods such as colonoscopy and biopsy have limitations. Colonoscopy…

机器学习 · 统计学 2023-07-18 Shangqing Tong , Peng Ge , Yanan Jiao , Zhaofu Ma , Ziye Li , Longhai Liu , Feng Gao , Xiaohui Du , Fei Gao

Lymph node station (LNS) delineation from computed tomography (CT) scans is an indispensable step in radiation oncology workflow. High inter-user variabilities across oncologists and prohibitive laboring costs motivated the automated…

图像与视频处理 · 电气工程与系统科学 2021-09-21 Dazhou Guo , Xianghua Ye , Jia Ge , Xing Di , Le Lu , Lingyun Huang , Guotong Xie , Jing Xiao , Zhongjie Liu , Ling Peng , Senxiang Yan , Dakai Jin

Colorectal cancer (CRC) is one of the most common types of cancer with a high mortality rate. Colonoscopy is the preferred procedure for CRC screening and has proven to be effective in reducing CRC mortality. Thus, a reliable computer-aided…

计算机视觉与模式识别 · 计算机科学 2021-09-15 Kaidong Li , Mohammad I. Fathan , Krushi Patel , Tianxiao Zhang , Cuncong Zhong , Ajay Bansal , Amit Rastogi , Jean S. Wang , Guanghui Wang

We evaluated the viability of using a Large Language Model (LLM) to extract patient-specific specific toxicity and progression outcomes from unstructured radiology reports. We retrospectively extracted 160 follow-up CT and PET/CT electronic…

医学物理 · 物理学 2026-03-02 Justin Pijanowski , Yakout Mezgueldi , Alan Lee , Drew Moghanaki , Ricky R. Savjani , James Lamb

Extracting structured information from clinical notes requires navigating a dense web of interdependent variables where the value of one attribute logically constrains others. Existing Large Language Model (LLM)-based extraction pipelines…

Colorectal cancer is a prevalent form of cancer, and many patients develop colorectal cancer liver metastasis (CRLM) as a result. Early detection of CRLM is critical for improving survival rates. Radiologists usually rely on a series of…

图像与视频处理 · 电气工程与系统科学 2024-12-04 Xueyang Li , Han Xiao , Weixiang Weng , Xiaowei Xu , Yiyu Shi
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