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Here we study the semantic search and retrieval problem in biomedical digital libraries. First, we introduce MedGraph, a knowledge graph embedding-based method that provides semantic relevance retrieval and ranking for the biomedical…

信息检索 · 计算机科学 2021-12-15 Islam Akef Ebeid , Elizabeth Pierce

Text embedding has become a foundational technology in natural language processing (NLP) during the deep learning era, driving advancements across a wide array of downstream tasks. While many natural language understanding challenges can…

计算与语言 · 计算机科学 2025-10-22 Zhijie Nie , Zhangchi Feng , Mingxin Li , Cunwang Zhang , Yanzhao Zhang , Dingkun Long , Richong Zhang

Entity recognition is a critical first step to a number of clinical NLP applications, such as entity linking and relation extraction. We present the first attempt to apply state-of-the-art entity recognition approaches on a newly released…

计算与语言 · 计算机科学 2019-10-04 Kathleen C. Fraser , Isar Nejadgholi , Berry De Bruijn , Muqun Li , Astha LaPlante , Khaldoun Zine El Abidine

Clinical notes contain rich clinical narratives but their unstructured format poses challenges for large-scale analysis. Standardized terminologies such as SNOMED CT improve interoperability, yet understanding how concepts relate through…

计算与语言 · 计算机科学 2025-09-05 Ali Noori , Somya Mohanty , Prashanti Manda

Tradition tweet classification models for crisis response focus on convolutional layers and domain-specific word embeddings. In this paper, we study the application of different neural networks with general-purpose and domain-specific word…

计算与语言 · 计算机科学 2019-03-27 Reem ALRashdi , Simon O'Keefe

Early prediction of mortality and length of stay(LOS) of a patient is vital for saving a patient's life and management of hospital resources. Availability of electronic health records(EHR) makes a huge impact on the healthcare domain and…

机器学习 · 计算机科学 2020-12-01 Batuhan Bardak , Mehmet Tan

Extracting detailed clinical information from free-text medical narratives remains a practical challenge for researchers and healthcare systems. Terminology for immune-mediated and infectious diseases is especially inconsistent across…

计算与语言 · 计算机科学 2026-05-29 Veysel Kocaman , Gursev Pirge , Yigit Gul , Ace Vo , Zhenya Nargizyan , David Talby

Word embeddings are effective intermediate representations for capturing semantic regularities between words, when learning the representations of text sequences. We propose to view text classification as a label-word joint embedding…

计算与语言 · 计算机科学 2018-05-14 Guoyin Wang , Chunyuan Li , Wenlin Wang , Yizhe Zhang , Dinghan Shen , Xinyuan Zhang , Ricardo Henao , Lawrence Carin

Disease risk prediction has attracted increasing attention in the field of modern healthcare, especially with the latest advances in artificial intelligence (AI). Electronic health records (EHRs), which contain heterogeneous patient…

人工智能 · 计算机科学 2022-01-19 Shuai Niu , Qing Yin , Yunya Song , Yike Guo , Xian Yang

Most existing word embedding methods can be categorized into Neural Embedding Models and Matrix Factorization (MF)-based methods. However some models are opaque to probabilistic interpretation, and MF-based methods, typically solved using…

计算与语言 · 计算机科学 2015-08-18 Shaohua Li , Jun Zhu , Chunyan Miao

Neural network-based representations ("embeddings") have dramatically advanced natural language processing (NLP) tasks, including clinical NLP tasks such as concept extraction. Recently, however, more advanced embedding methods and…

计算与语言 · 计算机科学 2019-08-15 Yuqi Si , Jingqi Wang , Hua Xu , Kirk Roberts

Deep learning embeddings have been successfully used for many natural language processing problems. Embeddings are mostly computed for word forms although a number of recent papers have extended this to other linguistic units like morphemes…

计算与语言 · 计算机科学 2013-12-20 Wenpeng Yin , Hinrich Schütze

While deep-learning based recommender systems utilizing collaborative filtering have been commonly used for recommendation in other domains, their application in the medical domain have been limited. In addition to modeling user-item…

信息检索 · 计算机科学 2023-09-19 Aashish Cheruvu

This paper addresses the challenges posed by the unstructured nature and high-dimensional semantic complexity of electronic health record texts. A deep learning method based on attention mechanisms is proposed to achieve unified modeling…

计算与语言 · 计算机科学 2025-07-03 Ting Xu , Xiaoxiao Deng , Xiandong Meng , Haifeng Yang , Yan Wu

Recent studies show that deep learning models achieve good performance on medical imaging tasks such as diagnosis prediction. Among the models, multimodality has been an emerging trend, integrating different forms of data such as chest…

机器学习 · 计算机科学 2022-02-10 Haodi Zhang , Chenyu Xu , Peirou Liang , Ke Duan , Hao Ren , Weibin Cheng , Kaishun Wu

Recent advancements in deep learning have proven highly effective in medical image classification, notably within histopathology. However, noisy labels represent a critical challenge in histopathology image classification, where accurate…

计算机视觉与模式识别 · 计算机科学 2024-04-12 Lucas Dedieu , Nicolas Nerrienet , Adrien Nivaggioli , Clara Simmat , Marceau Clavel , Arnaud Gauthier , Stéphane Sockeel , Rémy Peyret

Text embeddings are numerical representations of text data, where words, phrases, or entire documents are converted into vectors of real numbers. These embeddings capture semantic meanings and relationships between text elements in a…

信息检索 · 计算机科学 2025-01-20 Fusheng Wei , Robert Neary , Han Qin , Qiang Mao , Jianping Zhang

Depression, a prevalent mental health disorder impacting millions globally, demands reliable assessment systems. Unlike previous studies that focus solely on either detecting depression or predicting its severity, our work identifies…

Levering data on social media, such as Twitter and Facebook, requires information retrieval algorithms to become able to relate very short text fragments to each other. Traditional text similarity methods such as tf-idf cosine-similarity,…

信息检索 · 计算机科学 2015-12-03 Cedric De Boom , Steven Van Canneyt , Steven Bohez , Thomas Demeester , Bart Dhoedt

Learning a high-dimensional dense representation for vocabulary terms, also known as a word embedding, has recently attracted much attention in natural language processing and information retrieval tasks. The embedding vectors are typically…

信息检索 · 计算机科学 2017-07-18 Hamed Zamani , W. Bruce Croft